RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 DDX20Q9UHI6 824 aaKnown RBP24.87■■□□□ 1.57
LIME1-207ENST00000489212 U3KPZ7 1027 aaPredicted RBP24.87■■□□□ 1.57
LIME1-207ENST00000489212 CCDC178Q5BJE1 867 aa24.86■■□□□ 1.57
LIME1-207ENST00000489212 SYDE2Q5VT97 1194 aa24.86■■□□□ 1.57
LIME1-207ENST00000489212 NECAB2Q7Z6G3 386 aa24.86■■□□□ 1.57
LIME1-207ENST00000489212 MAP4K1Q92918 833 aa24.86■■□□□ 1.57
LIME1-207ENST00000489212 DDX11Q96FC9 970 aa24.86■■□□□ 1.57
LIME1-207ENST00000489212 TINF2Q9BSI4 451 aa24.86■■□□□ 1.57
LIME1-207ENST00000489212 RANBP17Q9H2T7 1088 aaKnown RBP24.86■■□□□ 1.57
LIME1-207ENST00000489212 FBXO40Q9UH90 709 aa24.86■■□□□ 1.57
LIME1-207ENST00000489212 TNKSO95271 1327 aa24.86■■□□□ 1.57
LIME1-207ENST00000489212 ALPK3Q96L96 1907 aa24.85■■□□□ 1.57
LIME1-207ENST00000489212 BMP2KLQ5H9B9 411 aa24.85■■□□□ 1.57
LIME1-207ENST00000489212 CYB5R4Q7L1T6 521 aa24.85■■□□□ 1.57
LIME1-207ENST00000489212 PNMA1Q8ND90 353 aa24.85■■□□□ 1.57
LIME1-207ENST00000489212 DPF3Q92784 378 aa24.85■■□□□ 1.57
LIME1-207ENST00000489212 CCDC136Q96JN2 1154 aa24.85■■□□□ 1.57
LIME1-207ENST00000489212 HTATIP2Q9BUP3 242 aa24.85■■□□□ 1.57
LIME1-207ENST00000489212 RNF146Q9NTX7 359 aa24.85■■□□□ 1.57
LIME1-207ENST00000489212 ANKRD35Q8N283 1001 aa24.84■■□□□ 1.57
LIME1-207ENST00000489212 FGD4Q96M96 766 aa24.84■■□□□ 1.57
LIME1-207ENST00000489212 ACAD9Q9H845 621 aa24.84■■□□□ 1.57
LIME1-207ENST00000489212 SEPT4O43236 478 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 GOLGA8HP0CJ92 632 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 ALAS1P13196 640 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 TKFCQ3LXA3 575 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 ANO1Q5XXA6 986 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 STOX1Q6ZVD7 989 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 TRERF1Q96PN7 1200 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 ESYT1Q9BSJ8 1104 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 LSG1Q9H089 658 aaKnown RBP24.83■■□□□ 1.57
LIME1-207ENST00000489212 KAT14Q9H8E8 782 aa24.83■■□□□ 1.57
LIME1-207ENST00000489212 RBM8AQ9Y5S9 174 aaKnown RBP24.83■■□□□ 1.57
LIME1-207ENST00000489212 MSCO60682 206 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 ICAM1P05362 532 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 SEC23AQ15436 765 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 MUM1L1Q5H9M0 696 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 UBAC1Q9BSL1 405 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 CPVLQ9H3G5 476 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 C11orf49Q9H6J7 331 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 A1CFQ9NQ94 594 aaKnown RBP24.82■■□□□ 1.56
LIME1-207ENST00000489212 CCPG1Q9ULG6 757 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 PFASO15067 1338 aa24.82■■□□□ 1.56
LIME1-207ENST00000489212 E7EWF7 191 aa24.81■■□□□ 1.56
LIME1-207ENST00000489212 H0YGN5 161 aa24.81■■□□□ 1.56
LIME1-207ENST00000489212 COL6A1P12109 1028 aa24.81■■□□□ 1.56
LIME1-207ENST00000489212 MAMDC4Q6UXC1 1216 aa24.81■■□□□ 1.56
LIME1-207ENST00000489212 NRBP1Q9UHY1 535 aa24.81■■□□□ 1.56
LIME1-207ENST00000489212 MCM3APO60318 1980 aa24.81■■□□□ 1.56
LIME1-207ENST00000489212 SNAI1O95863 264 aaPredicted RBP24.8■■□□□ 1.56
LIME1-207ENST00000489212 ZNF865P0CJ78 1059 aaPredicted RBP24.8■■□□□ 1.56
LIME1-207ENST00000489212 CNTN2Q02246 1040 aa24.8■■□□□ 1.56
LIME1-207ENST00000489212 TRDNQ13061 729 aa24.8■■□□□ 1.56
LIME1-207ENST00000489212 GPATCH4Q5T3I0 446 aaKnown RBP24.8■■□□□ 1.56
LIME1-207ENST00000489212 ZNF467Q7Z7K2 595 aaPredicted RBP24.8■■□□□ 1.56
LIME1-207ENST00000489212 MSL3Q8N5Y2 521 aaKnown RBP24.8■■□□□ 1.56
LIME1-207ENST00000489212 UBA5Q9GZZ9 404 aa24.8■■□□□ 1.56
LIME1-207ENST00000489212 SYNGAP1Q96PV0 1343 aa24.8■■□□□ 1.56
LIME1-207ENST00000489212 IFIT1BQ5T764 474 aaKnown RBP24.79■■□□□ 1.56
LIME1-207ENST00000489212 KIAA1211Q6ZU35 1233 aa24.79■■□□□ 1.56
LIME1-207ENST00000489212 FAM133AQ8N9E0 248 aa24.79■■□□□ 1.56
LIME1-207ENST00000489212 DNAH12Q6ZR08 3092 aa24.79■■□□□ 1.56
LIME1-207ENST00000489212 POTEB2H3BUK9 544 aa24.78■■□□□ 1.56
LIME1-207ENST00000489212 SENP2Q9HC62 589 aa24.78■■□□□ 1.56
LIME1-207ENST00000489212 LCTP09848 1927 aa24.78■■□□□ 1.56
LIME1-207ENST00000489212 SOWAHBA6NEL2 793 aa24.77■■□□□ 1.56
LIME1-207ENST00000489212 CHST3Q7LGC8 479 aa24.77■■□□□ 1.56
LIME1-207ENST00000489212 NCOA7Q8NI08 942 aa24.77■■□□□ 1.56
LIME1-207ENST00000489212 CYP39A1Q9NYL5 469 aa24.77■■□□□ 1.56
LIME1-207ENST00000489212 CNPY2Q9Y2B0 182 aa24.77■■□□□ 1.56
LIME1-207ENST00000489212 EVI5O60447 810 aa24.76■■□□□ 1.55
LIME1-207ENST00000489212 NEFLP07196 543 aa24.76■■□□□ 1.55
LIME1-207ENST00000489212 ANTXR2P58335 489 aa24.76■■□□□ 1.55
LIME1-207ENST00000489212 ASPRV1Q53RT3 343 aa24.76■■□□□ 1.55
LIME1-207ENST00000489212 GJC2Q5T442 439 aaPredicted RBP24.76■■□□□ 1.55
LIME1-207ENST00000489212 RALYLQ86SE5 291 aaKnown RBP24.76■■□□□ 1.55
LIME1-207ENST00000489212 MB21D2Q8IYB1 491 aaPredicted RBP24.76■■□□□ 1.55
LIME1-207ENST00000489212 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.76■■□□□ 1.55
LIME1-207ENST00000489212 ASTN1O14525 1302 aa24.76■■□□□ 1.55
LIME1-207ENST00000489212 DNM1LO00429 736 aa24.75■■□□□ 1.55
LIME1-207ENST00000489212 NFIBO00712 420 aa24.75■■□□□ 1.55
LIME1-207ENST00000489212 PARP1P09874 1014 aaKnown RBP24.75■■□□□ 1.55
LIME1-207ENST00000489212 NSMFQ6X4W1 530 aa24.75■■□□□ 1.55
LIME1-207ENST00000489212 ARMCX2Q7L311 632 aa24.75■■□□□ 1.55
LIME1-207ENST00000489212 CLEC4DQ8WXI8 215 aa24.75■■□□□ 1.55
LIME1-207ENST00000489212 LENG1Q96BZ8 264 aaPredicted RBP24.75■■□□□ 1.55
LIME1-207ENST00000489212 PURBQ96QR8 312 aaKnown RBP24.75■■□□□ 1.55
LIME1-207ENST00000489212 ANO2Q9NQ90 1003 aa24.75■■□□□ 1.55
LIME1-207ENST00000489212 RANBP2P49792 3224 aaKnown RBP24.74■■□□□ 1.55
LIME1-207ENST00000489212 IFIT3O14879 490 aaKnown RBP24.74■■□□□ 1.55
LIME1-207ENST00000489212 SLC27A2O14975 620 aa24.74■■□□□ 1.55
LIME1-207ENST00000489212 COL9A3Q14050 684 aaPredicted RBP24.74■■□□□ 1.55
LIME1-207ENST00000489212 CCDC144CPQ8IYA2 1237 aa24.74■■□□□ 1.55
LIME1-207ENST00000489212 ADGRF4Q8IZF3 695 aa24.74■■□□□ 1.55
LIME1-207ENST00000489212 STAG2Q8N3U4 1231 aa24.74■■□□□ 1.55
LIME1-207ENST00000489212 ZHX1Q9UKY1 873 aaPredicted RBP24.74■■□□□ 1.55
LIME1-207ENST00000489212 NR2E3Q9Y5X4 410 aa24.74■■□□□ 1.55
LIME1-207ENST00000489212 DDX49Q9Y6V7 483 aaKnown RBP24.74■■□□□ 1.55
LIME1-207ENST00000489212 WDR19Q8NEZ3 1342 aa24.74■■□□□ 1.55
LIME1-207ENST00000489212 AKR1A1P14550 325 aa24.73■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms