RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 HOOK2Q96ED9 719 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 SPAG5Q96R06 1193 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 OSBPL9Q96SU4 736 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 NUP58Q9BVL2 599 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 YIPF3Q9GZM5 350 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 MLXIPQ9HAP2 919 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 REXO2Q9Y3B8 237 aaKnown RBP6.92□□□□□ -1.3
VPS13D-209ENST00000487188 CPDO75976 1380 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 MAP3K15Q6ZN16 1313 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 UBN2Q6ZU65 1347 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 OVOS2A0A0G2JMS6 1433 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 ANKARQ7Z5J8 1434 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 GOLGA6L10A0A0M3HER8 536 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 RASSF9O75901 435 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 SLC8A3P57103 927 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 ZNF174Q15697 407 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 RCSD1Q6JBY9 416 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 KLHL7Q8IXQ5 586 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC170Q8IYT3 715 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 NSMCE1Q8WV22 266 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 SELENOSQ9BQE4 189 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 PYM1Q9BRP8 204 aaKnown RBP6.92□□□□□ -1.3
VPS13D-209ENST00000487188 NOD2Q9HC29 1040 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 TBC1D2BQ9UPU7 963 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 PEAK1Q9H792 1746 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 B4DLN1 442 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 ZPR1O75312 459 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 DEXIO95424 95 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 KCNA6P17658 529 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 CTNNA1P35221 906 aaKnown RBP6.92□□□□□ -1.3
VPS13D-209ENST00000487188 MAGEA1P43355 309 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 DNM2P50570 870 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 AMOTQ4VCS5 1084 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 CAVIN3Q969G5 261 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 LRRC45Q96CN5 670 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 ZBTB10Q96DT7 871 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 MED15Q96RN5 788 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 LACRTQ9GZZ8 138 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 NAPBQ9H115 298 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 FOXP1Q9H334 677 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-209ENST00000487188 EXOC1Q9NV70 894 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 EHD2Q9NZN4 543 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 SWAP70Q9UH65 585 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 TBX22Q9Y458 520 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 KDM6AO15550 1401 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 LGALS16A8MUM7 142 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 PPP1R3GB7ZBB8 358 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 H7C1D1 291 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 RNF225M0QZC1 329 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 STAT6P42226 847 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 SCTRP47872 440 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 SLC39A6Q13433 755 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 WTAPQ15007 396 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 KRT71Q3SY84 523 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 GLE1Q53GS7 698 aaKnown RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 ANKRD20A8PQ5CZ79 823 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 HAUS3Q68CZ6 603 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 ARMC9Q7Z3E5 817 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 CACNA2D4Q7Z3S7 1137 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 FAM114A1Q8IWE2 563 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 ANKRD13CQ8N6S4 541 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC197Q8NCU1 140 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 WHAMMQ8TF30 809 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 SEC16BQ96JE7 1060 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 KRT12Q99456 494 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 INCENPQ9NQS7 918 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 SEC31BQ9NQW1 1179 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 AATFQ9NY61 560 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 NOP53Q9NZM5 478 aaKnown RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 SAMD15Q9P1V8 674 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 N4BP2Q86UW6 1770 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 UTYO14607 1347 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 OPLAHO14841 1288 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 NCK2O43639 380 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 GTPBP6O43824 516 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 FMNL1O95466 1100 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 KIF5BP33176 963 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 CARSP49589 748 aaKnown RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 PPP4R3AQ6IN85 833 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 GIGYF2Q6Y7W6 1299 aaKnown RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 APTXQ7Z2E3 356 aaKnown RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 C2CD5Q86YS7 1000 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 ZNF526Q8TF50 670 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 FERMT2Q96AC1 680 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 XAGE2Q96GT9 111 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 NOX5Q96PH1 765 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 BUB1O43683 1085 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 FECHP22830 423 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 KRT2P35908 639 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 CYB5R4Q7L1T6 521 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 TBC1D1Q86TI0 1168 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 TAX1BP1Q86VP1 789 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 CMTR1Q8N1G2 835 aaKnown RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 FBXL16Q8N461 479 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 P3H4Q92791 437 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 CUL5Q93034 780 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 STAMBPL1Q96FJ0 436 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC85AQ96PX6 553 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-209ENST00000487188 TANGO6Q9C0B7 1094 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms