RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 C21orf2O43822 256 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 PHACTR2O75167 634 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 IBSPP21815 317 aaPredicted RBP14.78□□□□□ -0.04
HMGN1-216ENST00000486741 ETF1P62495 437 aaKnown RBP14.78□□□□□ -0.04
HMGN1-216ENST00000486741 BMS1Q14692 1282 aaKnown RBP14.78□□□□□ -0.04
HMGN1-216ENST00000486741 ABCB5Q2M3G0 1257 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 PPP1R13BQ96KQ4 1090 aa14.78□□□□□ -0.04
HMGN1-216ENST00000486741 TCRBV5S4A2TA0A5A2 114 aa14.77□□□□□ -0.04
HMGN1-216ENST00000486741 PLCG1P19174 1290 aa14.77□□□□□ -0.04
HMGN1-216ENST00000486741 IQCEQ6IPM2 695 aa14.77□□□□□ -0.04
HMGN1-216ENST00000486741 NSMFQ6X4W1 530 aa14.77□□□□□ -0.04
HMGN1-216ENST00000486741 TPH2Q8IWU9 490 aa14.77□□□□□ -0.04
HMGN1-216ENST00000486741 HINFPQ9BQA5 517 aa14.77□□□□□ -0.04
HMGN1-216ENST00000486741 TDRD3Q9H7E2 651 aaKnown RBP14.77□□□□□ -0.04
HMGN1-216ENST00000486741 LTN1O94822 1766 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 MYCLP12524 364 aaPredicted RBP14.77□□□□□ -0.05
HMGN1-216ENST00000486741 TRAPPC10P48553 1259 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 KRT83P78385 493 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 RBL2Q08999 1139 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 TBC1D16Q8TBP0 767 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 CYP26C1Q6V0L0 522 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 RDH13Q8NBN7 331 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 ENGASEQ8NFI3 743 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 KIAA1024Q9UPX6 916 aa14.77□□□□□ -0.05
HMGN1-216ENST00000486741 FBXO2Q9UK22 296 aaPredicted RBP14.76□□□□□ -0.05
HMGN1-216ENST00000486741 TRIM49BA6NDI0 452 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 COPB1P53618 953 aaKnown RBP14.76□□□□□ -0.05
HMGN1-216ENST00000486741 GPBP1Q86WP2 473 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 GOLGA1Q92805 767 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 RIOK1Q9BRS2 568 aaKnown RBP14.76□□□□□ -0.05
HMGN1-216ENST00000486741 JCADQ9P266 1359 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 B4DLN1 442 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 AKR1B1P15121 316 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 TYW1BQ6NUM6 668 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 ENOX1Q8TC92 643 aaKnown RBP14.76□□□□□ -0.05
HMGN1-216ENST00000486741 COA1Q9GZY4 146 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 DNM3Q9UQ16 869 aa14.76□□□□□ -0.05
HMGN1-216ENST00000486741 MEIS1O00470 390 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 CDC25BP30305 580 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 CHRNA5P30532 468 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 HLTFQ14527 1009 aaKnown RBP eCLIP14.75□□□□□ -0.05
HMGN1-216ENST00000486741 RC3H1Q5TC82 1133 aaKnown RBP14.75□□□□□ -0.05
HMGN1-216ENST00000486741 RRAGAQ7L523 313 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 AGXT2Q9BYV1 514 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 TNS2Q63HR2 1409 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 SOWAHDA6NJG2 315 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L15C9J2P7 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L13C9JLJ4 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L11C9JVI0 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L18D6R9N7 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L22D6RA61 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L17D6RBQ6 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L19D6RCP7 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L20D6RJB6 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 NPR1P16066 1061 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 ERCC5P28715 1186 aaPredicted RBP14.75□□□□□ -0.05
HMGN1-216ENST00000486741 EVX2Q03828 476 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L24Q0WX57 530 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L6PQ6QN14 398 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 FBXO11Q86XK2 927 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 KRT222Q8N1A0 295 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 BICD1Q96G01 975 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 POTEMA6NI47 508 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 SORBS3O60504 671 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 TACC1O75410 805 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 HS2ST1Q7LGA3 356 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 ILDR1Q86SU0 546 aaPredicted RBP14.75□□□□□ -0.05
HMGN1-216ENST00000486741 TMTC1Q8IUR5 882 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 ANKRD13CQ8N6S4 541 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 CNKSR1Q969H4 720 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 CCDC94Q9BW85 323 aaPredicted RBP14.75□□□□□ -0.05
HMGN1-216ENST00000486741 PLEKHA4Q9H4M7 779 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 HOXA13P31271 388 aaPredicted RBP14.75□□□□□ -0.05
HMGN1-216ENST00000486741 TROAPQ12815 778 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 PTPROQ16827 1216 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 VSTM4Q8IW00 320 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 BCS1LQ9Y276 419 aa14.75□□□□□ -0.05
HMGN1-216ENST00000486741 TEX33O43247 280 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 ORC4O43929 436 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 TERF1P54274 439 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 PABPC4Q13310 644 aaKnown RBP eCLIP14.74□□□□□ -0.054e-10■□□□□ 10.7
HMGN1-216ENST00000486741 HAUS3Q68CZ6 603 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 SARM1Q6SZW1 724 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 NIM1KQ8IY84 436 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 GBP3Q9H0R5 595 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 PCDHB13Q9Y5F0 798 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 GTF2F1P35269 517 aaKnown RBP eCLIP14.74□□□□□ -0.05
HMGN1-216ENST00000486741 TBC1D10BQ4KMP7 808 aaPredicted RBP14.74□□□□□ -0.05
HMGN1-216ENST00000486741 TTBK2Q6IQ55 1244 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 GALNT17Q6IS24 598 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 OR8K1Q8NGG5 319 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 FUCA2Q9BTY2 467 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.74□□□□□ -0.05
HMGN1-216ENST00000486741 H7C1D1 291 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 GCNT3O95395 438 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 CRKP46108 304 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 ASPRV1Q53RT3 343 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 STXBP4Q6ZWJ1 553 aa14.74□□□□□ -0.05
HMGN1-216ENST00000486741 SCAF8Q9UPN6 1271 aaKnown RBP14.74□□□□□ -0.05
HMGN1-216ENST00000486741 USP17L10C9JJH3 530 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms