RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 DPP9Q86TI2 863 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 CPXCR1Q8N123 301 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 PRPF38AQ8NAV1 312 aaKnown RBP9.41□□□□□ -0.9
USP40-216ENST00000485943 SOCS4Q8WXH5 440 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 TTC14Q96N46 770 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 R3HDMLQ9H3Y0 253 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 SYNPO2Q9UMS6 1093 aa9.41□□□□□ -0.9
USP40-216ENST00000485943 MGAMO43451 1857 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 LAMA4Q16363 1823 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 NEDD4P46934 1319 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 A0A1W2PRG0 241 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 CCDC69A6NI79 296 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 PPP1R3GB7ZBB8 358 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 SLC25A27O95847 323 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 NDUFB10O96000 172 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 FDX1P10109 184 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 KCTD2Q14681 263 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 PLEKHH3Q7Z736 793 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 CATIPQ7Z7H3 387 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 SKAP1Q86WV1 359 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 TBC1D10CQ8IV04 446 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 GMCL1P1Q8NEA9 526 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 DCAF4Q8WV16 495 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 DDX11Q96FC9 970 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 ABHD8Q96I13 439 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 ZSCAN10Q96SZ4 725 aaPredicted RBP9.4□□□□□ -0.9
USP40-216ENST00000485943 NUP88Q99567 741 aaPredicted RBP9.4□□□□□ -0.9
USP40-216ENST00000485943 UPF2Q9HAU5 1272 aaKnown RBP9.4□□□□□ -0.9
USP40-216ENST00000485943 INCENPQ9NQS7 918 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 PTPN22Q9Y2R2 807 aa9.4□□□□□ -0.9
USP40-216ENST00000485943 PLIN4Q96Q06 1357 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 TNKSO95271 1327 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 C3orf80F5H4A9 247 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 SMIM22K7EJ46 135 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 NMT2O60551 498 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 PARP1P09874 1014 aaKnown RBP9.39□□□□□ -0.91
USP40-216ENST00000485943 BCRP11274 1271 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 FCER1AP12319 257 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 CYP2B6P20813 491 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 GRK4P32298 578 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 MCM5P33992 734 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 RGS2P41220 211 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 PTH1RQ03431 593 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 TMEM67Q5HYA8 995 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 SNRNP48Q6IEG0 339 aaKnown RBP9.39□□□□□ -0.91
USP40-216ENST00000485943 CCDC174Q6PII3 467 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 KCTD1Q719H9 257 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 TRMT44Q8IYL2 757 aaKnown RBP9.39□□□□□ -0.91
USP40-216ENST00000485943 PNMA1Q8ND90 353 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 NUP133Q8WUM0 1156 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 ATG4CQ96DT6 458 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 MPHOSPH6Q99547 160 aaKnown RBP9.39□□□□□ -0.91
USP40-216ENST00000485943 SRRDQ9UH36 339 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 PNMA2Q9UL42 364 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 PPP1R9AQ9ULJ8 1098 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP40-216ENST00000485943 PTCH2Q9Y6C5 1203 aa9.39□□□□□ -0.91
USP40-216ENST00000485943 FRMPD2Q68DX3 1309 aaPredicted RBP9.38□□□□□ -0.91
USP40-216ENST00000485943 E7EWF7 191 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 ADCY3O60266 1144 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 HMGB1P09429 215 aaKnown RBP9.38□□□□□ -0.91
USP40-216ENST00000485943 PTPREP23469 700 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 PSMA5P28066 241 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 STAT3P40763 770 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 FLT3LGP49771 235 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 PRKCZQ05513 592 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 MOGSQ13724 837 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 GPATCH4Q5T3I0 446 aaKnown RBP9.38□□□□□ -0.91
USP40-216ENST00000485943 MFSD14CQ5VZR4 134 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 RCSD1Q6JBY9 416 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 GPR142Q7Z601 462 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 DGKHQ86XP1 1220 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 ANKRD35Q8N283 1001 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 TMTC2Q8N394 836 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 CTCFLQ8NI51 663 aaPredicted RBP9.38□□□□□ -0.91
USP40-216ENST00000485943 MMP19Q99542 508 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 TEX13BQ9BXU2 312 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 ARHGAP39Q9C0H5 1083 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 SPATC1LQ9H0A9 340 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 MROH8Q9H579 483 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 HOMER2Q9NSB8 354 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 TCP11L1Q9NUJ3 509 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 FBXO40Q9UH90 709 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 HPS5Q9UPZ3 1129 aa9.38□□□□□ -0.91
USP40-216ENST00000485943 VWA5AO00534 786 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 STRNO43815 780 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 CYP21A2P08686 494 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 ALAS1P13196 640 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 ERCC3P19447 782 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 CNGA1P29973 690 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 KIF5BP33176 963 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 TRAF1Q13077 416 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 ASPRV1Q53RT3 343 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 CREB3L3Q68CJ9 461 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 MAP4K1Q92918 833 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 MKL1Q969V6 931 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 GMCL1Q96IK5 515 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 NEK1Q96PY6 1258 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 TMEM47Q9BQJ4 181 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 ZSWIM5Q9P217 1185 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms