RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 CTDP1Q9Y5B0 961 aaPredicted RBP16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 DUSP11O75319 330 aaKnown RBP16.52■□□□□ 0.24
SQSTM1-208ENST00000485412 C6orf222P0C671 652 aaPredicted RBP16.52■□□□□ 0.24
SQSTM1-208ENST00000485412 TDO2P48775 406 aa16.52■□□□□ 0.24
SQSTM1-208ENST00000485412 PCSK9Q8NBP7 692 aaKnown RBP16.52■□□□□ 0.24
SQSTM1-208ENST00000485412 PI4K2BQ8TCG2 481 aa16.52■□□□□ 0.24
SQSTM1-208ENST00000485412 DDX49Q9Y6V7 483 aaKnown RBP16.52■□□□□ 0.24
SQSTM1-208ENST00000485412 ELP1O95163 1332 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 FOXP2O15409 715 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 APPP05067 770 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 COL9A1P20849 921 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 PTGS1P23219 599 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 IFNL3Q8IZI9 196 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 TMEM199Q8N511 208 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 PRPF38AQ8NAV1 312 aaKnown RBP16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 PBX4Q9BYU1 374 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 SLC38A10Q9HBR0 1119 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 MTMR4Q9NYA4 1195 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 PCDHB15Q9Y5E8 787 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 PLIN4Q96Q06 1357 aa16.51■□□□□ 0.23
SQSTM1-208ENST00000485412 GBF1Q92538 1859 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 A0A0U1RQG5 324 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 GRXCR1A8MXD5 290 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 TLR3O15455 904 aaKnown RBP16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 ASGR1P07306 291 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 CST5P28325 142 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 PBX2P40425 430 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 ACVR2BQ13705 512 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 TMEM240Q5SV17 173 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 CCSAPQ6IQ19 270 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 PSRC1Q6PGN9 363 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 MAMDC4Q6UXC1 1216 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 MKL1Q969V6 931 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 PPP1R12CQ9BZL4 782 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 PRDM12Q9H4Q4 367 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 INCENPQ9NQS7 918 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 HOMER2Q9NSB8 354 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 THEGQ9P2T0 379 aa16.5■□□□□ 0.23
SQSTM1-208ENST00000485412 ATP2A1O14983 1001 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 ZBED4O75132 1171 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 ACRP10323 421 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 CSF2RAP15509 400 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 CDK7P50613 346 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 CNTN2Q02246 1040 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 AKNAD1Q5T1N1 836 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 ZNF467Q7Z7K2 595 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 ZNF444Q8N0Y2 327 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 ATXN2LQ8WWM7 1075 aaKnown RBP16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 GPATCH3Q96I76 525 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 MSRAQ9UJ68 235 aa16.49■□□□□ 0.23
SQSTM1-208ENST00000485412 PATL2C9JE40 543 aaKnown RBP16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 ARVCFO00192 962 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 TTLL1O95922 423 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 ZFYP08048 801 aaPredicted RBP16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 SNAP25P60880 206 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 RAB30Q15771 203 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 CCDC144BQ3MJ40 725 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 GNASQ5JWF2 1037 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 SLFN13Q68D06 897 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 ZNF365Q70YC5 407 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 C16orf59Q7L2K0 433 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 ANKRD35Q8N283 1001 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 GMCL1P1Q8NEA9 526 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 IL27Q8NEV9 243 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 KATNBL1Q9H079 304 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 MTIF3Q9H2K0 278 aaKnown RBP16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 ABHD16BQ9H3Z7 469 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 CHD9Q3L8U1 2897 aa16.48■□□□□ 0.23
SQSTM1-208ENST00000485412 ASTN1O14525 1302 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 ZNF536O15090 1300 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 CTAGE5O15320 804 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 NMT2O60551 498 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 GNAT2P19087 354 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 IGFBP4P22692 258 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 GJA9P57773 515 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 TFAP4Q01664 338 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 PPARAQ07869 468 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 ZMYM1Q5SVZ6 1142 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 RASIP1Q5U651 963 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 ARMCX2Q7L311 632 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 FAM126BQ8IXS8 530 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 NEDD1Q8NHV4 660 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 AGBL1Q96MI9 1066 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 UPF3AQ9H1J1 476 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 FEM1BQ9UK73 627 aa16.47■□□□□ 0.23
SQSTM1-208ENST00000485412 TMEM232C9JQI7 657 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 TSPY3P0CV98 308 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 TSPY8P0CW00 308 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 BMP3P12645 472 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 CTDSPL2Q05D32 466 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 CCDC85BQ15834 202 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 CCDC144CPQ8IYA2 1237 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 ADAMTS19Q8TE59 1207 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 ASB2Q96Q27 587 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 FSD1Q9BTV5 496 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 IL23AQ9NPF7 189 aa16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 FBXO40Q9UH90 709 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms