RNA–Protein interactions for RNA: ENST00000484729.2

HLA-DQB1-208, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-208ENST00000484729 MAMDC4Q6UXC1 1216 aa18.34■□□□□ 0.53
HLA-DQB1-208ENST00000484729 FAM126BQ8IXS8 530 aa18.34■□□□□ 0.53
HLA-DQB1-208ENST00000484729 MSL3Q8N5Y2 521 aaKnown RBP18.34■□□□□ 0.53
HLA-DQB1-208ENST00000484729 PCSK9Q8NBP7 692 aaKnown RBP18.34■□□□□ 0.53
HLA-DQB1-208ENST00000484729 IL27Q8NEV9 243 aa18.34■□□□□ 0.53
HLA-DQB1-208ENST00000484729 FAM122AQ96E09 287 aa18.34■□□□□ 0.53
HLA-DQB1-208ENST00000484729 KANSL2Q9H9L4 492 aa18.34■□□□□ 0.53
HLA-DQB1-208ENST00000484729 YBX2Q9Y2T7 364 aaKnown RBP18.34■□□□□ 0.53
HLA-DQB1-208ENST00000484729 RAB30Q15771 203 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CCDC144BQ3MJ40 725 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 GNASQ5JWF2 1037 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TSHZ3Q63HK5 1081 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CTR9Q6PD62 1173 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 HERVK_113Q902F9 699 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 SLF1Q9BQI6 1058 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TEX13BQ9BXU2 312 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 IL23AQ9NPF7 189 aa18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ARPP21Q9UBL0 812 aaPredicted RBP18.33■□□□□ 0.52
HLA-DQB1-208ENST00000484729 UMODL1Q5DID0 1318 aa18.32■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CPXCR1Q8N123 301 aa18.32■□□□□ 0.52
HLA-DQB1-208ENST00000484729 MICALL1Q8N3F8 863 aa18.32■□□□□ 0.52
HLA-DQB1-208ENST00000484729 FGD4Q96M96 766 aa18.32■□□□□ 0.52
HLA-DQB1-208ENST00000484729 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.32■□□□□ 0.52
HLA-DQB1-208ENST00000484729 UPF3AQ9H1J1 476 aaKnown RBP18.32■□□□□ 0.52
HLA-DQB1-208ENST00000484729 SLC28A3Q9HAS3 691 aa18.32■□□□□ 0.52
HLA-DQB1-208ENST00000484729 SPC25Q9HBM1 224 aa18.32■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CTAGE5O15320 804 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TLR3O15455 904 aaKnown RBP18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 FGBP02675 491 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 RABGGTBP53611 331 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 GJA9P57773 515 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 BEX3Q00994 111 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TFF2Q03403 129 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 OTOP2Q7RTS6 562 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 KBTBD3Q8NAB2 608 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 DCTPP1Q9H773 170 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 GBF1Q92538 1859 aa18.31■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TCF20Q9UGU0 1960 aaKnown RBP18.3■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CD4P01730 458 aa18.3■□□□□ 0.52
HLA-DQB1-208ENST00000484729 MYOGP15173 224 aa18.3■□□□□ 0.52
HLA-DQB1-208ENST00000484729 STK11IPQ8N1F8 1099 aa18.3■□□□□ 0.52
HLA-DQB1-208ENST00000484729 APPBP2Q92624 585 aa18.3■□□□□ 0.52
HLA-DQB1-208ENST00000484729 STRBPQ96SI9 672 aaKnown RBP18.3■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ABHD16BQ9H3Z7 469 aa18.3■□□□□ 0.52
HLA-DQB1-208ENST00000484729 RAVER2Q9HCJ3 691 aaKnown RBP18.3■□□□□ 0.52
HLA-DQB1-208ENST00000484729 BMP1P13497 986 aa18.29■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CCL23P55773 120 aa18.29■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ARMCX2Q7L311 632 aa18.29■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ZNF467Q7Z7K2 595 aaPredicted RBP18.29■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ANKRD35Q8N283 1001 aa18.29■□□□□ 0.52
HLA-DQB1-208ENST00000484729 HIPK3Q9H422 1215 aa18.29■□□□□ 0.52
HLA-DQB1-208ENST00000484729 MCM3APO60318 1980 aa18.29■□□□□ 0.52
HLA-DQB1-208ENST00000484729 XIRP2A4UGR9 3374 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 MYH7P12883 1935 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 MINDY4BA8MYZ0 360 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 F5H6K3 240 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 RNF113AO15541 343 aaKnown RBP18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 NDUFB10O96000 172 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 PTGS1P23219 599 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 KCNQ1P51787 676 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 KLRC3Q07444 240 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CXCL17Q6UXB2 119 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CCDC144CPQ8IYA2 1237 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 PRPF38AQ8NAV1 312 aaKnown RBP18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 OSBP2Q969R2 916 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 KIFC2Q96AC6 838 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 MTIF3Q9H2K0 278 aaKnown RBP18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 MKNK2Q9HBH9 465 aa18.28■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ASTN1O14525 1302 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 GSG1L2A8MUP6 293 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 GPAA1O43292 621 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ZBED4O75132 1171 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ZFYP08048 801 aaPredicted RBP18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 RASA1P20936 1047 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TDO2P48775 406 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CNTN2Q02246 1040 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 SBK1Q52WX2 424 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 PPP2R2DQ66LE6 453 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 NOL8Q76FK4 1167 aaKnown RBP18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 KATNBL1Q9H079 304 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TRPV6Q9H1D0 765 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TSPYL2Q9H2G4 693 aaPredicted RBP18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 CTDP1Q9Y5B0 961 aaPredicted RBP18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 TRANK1O15050 2925 aa18.27■□□□□ 0.52
HLA-DQB1-208ENST00000484729 ATP2A1O14983 1001 aa18.26■□□□□ 0.51
HLA-DQB1-208ENST00000484729 GIMAP6Q6P9H5 292 aa18.26■□□□□ 0.51
HLA-DQB1-208ENST00000484729 SLC43A3Q8NBI5 491 aa18.26■□□□□ 0.51
HLA-DQB1-208ENST00000484729 HOMER2Q9NSB8 354 aa18.26■□□□□ 0.51
HLA-DQB1-208ENST00000484729 DDX49Q9Y6V7 483 aaKnown RBP18.26■□□□□ 0.51
HLA-DQB1-208ENST00000484729 GRIN2DO15399 1336 aa18.25■□□□□ 0.51
HLA-DQB1-208ENST00000484729 M0R2C6 588 aa18.25■□□□□ 0.51
HLA-DQB1-208ENST00000484729 RFXAPO00287 272 aa18.25■□□□□ 0.51
HLA-DQB1-208ENST00000484729 APPP05067 770 aa18.25■□□□□ 0.51
HLA-DQB1-208ENST00000484729 GNAT2P19087 354 aa18.25■□□□□ 0.51
HLA-DQB1-208ENST00000484729 TNFAIP2Q03169 654 aa18.25■□□□□ 0.51
HLA-DQB1-208ENST00000484729 ITGA7Q13683 1181 aa18.25■□□□□ 0.51
HLA-DQB1-208ENST00000484729 SKIV2LQ15477 1246 aaKnown RBP18.25■□□□□ 0.51
HLA-DQB1-208ENST00000484729 LRRFIP1Q32MZ4 808 aaKnown RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms