RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 IKQ13123 557 aaPredicted RBP16.1■□□□□ 0.17
SMAD9-204ENST00000483941 GNL2Q13823 731 aaKnown RBP16.1■□□□□ 0.17
SMAD9-204ENST00000483941 BTNL9Q6UXG8 535 aa16.1■□□□□ 0.17
SMAD9-204ENST00000483941 CMTR1Q8N1G2 835 aaKnown RBP16.1■□□□□ 0.17
SMAD9-204ENST00000483941 ACER1Q8TDN7 264 aa16.1■□□□□ 0.17
SMAD9-204ENST00000483941 ZKSCAN4Q969J2 545 aaPredicted RBP16.1■□□□□ 0.17
SMAD9-204ENST00000483941 ELP3Q9H9T3 547 aa16.1■□□□□ 0.17
SMAD9-204ENST00000483941 GPCPD1Q9NPB8 672 aa16.1■□□□□ 0.17
SMAD9-204ENST00000483941 TMOD4Q9NZQ9 345 aa16.1■□□□□ 0.17
SMAD9-204ENST00000483941 ZHX2Q9Y6X8 837 aa16.1■□□□□ 0.17
SMAD9-204ENST00000483941 FRMPD2Q68DX3 1309 aaPredicted RBP16.1■□□□□ 0.17
SMAD9-204ENST00000483941 PNMA6FA0A0J9YX94 578 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 FDX1P10109 184 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 PPATQ06203 517 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 SPP2Q13103 211 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 VGLL4Q14135 290 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 TAF1CQ15572 869 aaPredicted RBP16.09■□□□□ 0.17
SMAD9-204ENST00000483941 CSPP1Q1MSJ5 1256 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 SHROOM1Q2M3G4 852 aaPredicted RBP16.09■□□□□ 0.17
SMAD9-204ENST00000483941 ATL3Q6DD88 541 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 CLEC17AQ6ZS10 378 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 BRAPQ7Z569 592 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 ERO1BQ86YB8 467 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 TEX2Q8IWB9 1127 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 TNPO1Q92973 898 aaKnown RBP16.09■□□□□ 0.17
SMAD9-204ENST00000483941 OTUD5Q96G74 571 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 GLT8D2Q9H1C3 349 aa16.09■□□□□ 0.17
SMAD9-204ENST00000483941 TMEM232C9JQI7 657 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 CXCL11O14625 94 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 MYCP01106 439 aaPredicted RBP16.08■□□□□ 0.16
SMAD9-204ENST00000483941 KRT40Q6A162 431 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 MCTP1Q6DN14 999 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 CHRDL2Q6WN34 429 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.08■□□□□ 0.16
SMAD9-204ENST00000483941 KCTD1Q719H9 257 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 BRI3BPQ8WY22 251 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 MS4A4AQ96JQ5 239 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 C12orf42Q96LP6 360 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 ZFYVE28Q9HCC9 887 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 LAMA3Q16787 3333 aa16.08■□□□□ 0.16
SMAD9-204ENST00000483941 ZBTB5O15062 677 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 GNA11P29992 359 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 PKN1Q16512 942 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 SYDE2Q5VT97 1194 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 PPP1R18Q6NYC8 613 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 ADGRF4Q8IZF3 695 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 BICD2Q8TD16 824 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 UBA5Q9GZZ9 404 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 FOXP1Q9H334 677 aaPredicted RBP16.07■□□□□ 0.16
SMAD9-204ENST00000483941 VAT1LQ9HCJ6 419 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 AFG3L2Q9Y4W6 797 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 SNCAIPQ9Y6H5 919 aa16.07■□□□□ 0.16
SMAD9-204ENST00000483941 MYH4Q9Y623 1939 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 CCL15-CCL14A0A0B4J2E2 113 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 CYTH3O43739 400 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 PPFIA3O75145 1194 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 MMP1P03956 469 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 NLRP5P59047 1200 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 MTMR2Q13614 643 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 PKP1Q13835 747 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 CCL15Q16663 113 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 SH3D19Q5HYK7 790 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 HEATR3Q7Z4Q2 680 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 HOMER1Q86YM7 354 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 SPICE1Q8N0Z3 855 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 PRPF38AQ8NAV1 312 aaKnown RBP16.06■□□□□ 0.16
SMAD9-204ENST00000483941 SH3TC2Q8TF17 1288 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 MTMR8Q96EF0 704 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 ZNF396Q96N95 335 aaPredicted RBP16.06■□□□□ 0.16
SMAD9-204ENST00000483941 JMJD4Q9H9V9 463 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 C6orf50Q9HD87 102 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 BARHL2Q9NY43 387 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 CFAP45Q9UL16 551 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 ZDHHC9Q9Y397 364 aa16.06■□□□□ 0.16
SMAD9-204ENST00000483941 SPDYE5A6NIY4 337 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 TRIM75PA6NK02 468 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 KRT2P35908 639 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 GTF2A2P52657 109 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 PPIL2Q13356 520 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 ZYXQ15942 572 aaKnown RBP16.05■□□□□ 0.16
SMAD9-204ENST00000483941 FAM83BQ5T0W9 1011 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 MCTP2Q6DN12 878 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 CNKSR2Q8WXI2 1034 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 PIGSQ96S52 555 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 CTDP1Q9Y5B0 961 aaPredicted RBP16.05■□□□□ 0.16
SMAD9-204ENST00000483941 DOCK1Q14185 1865 aa16.05■□□□□ 0.16
SMAD9-204ENST00000483941 ESYT2A0FGR8 921 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 DDX11L8A8MPP1 907 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 NAPAP54920 295 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 KRT85P78386 507 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 PABPC4Q13310 644 aaKnown RBP eCLIP16.04■□□□□ 0.16
SMAD9-204ENST00000483941 KIF22Q14807 665 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 TTBK2Q6IQ55 1244 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 FASTKD5Q7L8L6 764 aaKnown RBP16.04■□□□□ 0.16
SMAD9-204ENST00000483941 FAM43AQ8N2R8 423 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 SLF1Q9BQI6 1058 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 PHF20Q9BVI0 1012 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 AMNQ9BXJ7 453 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 VPS54Q9P1Q0 977 aa16.04■□□□□ 0.16
SMAD9-204ENST00000483941 USP17L15C9J2P7 530 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms