RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 ZNF236Q9UL36 1845 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 PALM3A6NDB9 673 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-208ENST00000476739 XRCC5P13010 732 aaKnown RBP11.33□□□□□ -0.6
HDAC3-208ENST00000476739 ZKSCAN1P17029 563 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-208ENST00000476739 RGS2P41220 211 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 GRM4Q14833 912 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 SART3Q15020 963 aaKnown RBP11.33□□□□□ -0.6
HDAC3-208ENST00000476739 ASPRV1Q53RT3 343 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 MUM1L1Q5H9M0 696 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 DHX32Q7L7V1 743 aaKnown RBP11.33□□□□□ -0.6
HDAC3-208ENST00000476739 NBPF11Q86T75 865 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 ADGRF4Q8IZF3 695 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 MMP19Q99542 508 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 APBA2Q99767 749 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 UNC93B1Q9H1C4 597 aa11.33□□□□□ -0.6
HDAC3-208ENST00000476739 BIN2Q9UBW5 565 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-208ENST00000476739 STRNO43815 780 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 IGHA2P01877 340 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 ICAM1P05362 532 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 HOXC6P09630 235 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 FDX1P10109 184 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 FCER1AP12319 257 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 ALAS1P13196 640 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 RXRAP19793 462 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 LIFRP42702 1097 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 DPP9Q86TI2 863 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 ZNF654Q8IZM8 581 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 NUP133Q8WUM0 1156 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 TMEM87BQ96K49 555 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 JAKMIP1Q96N16 626 aaKnown RBP11.32□□□□□ -0.6
HDAC3-208ENST00000476739 TRERF1Q96PN7 1200 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 MTA3Q9BTC8 594 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 JMJD4Q9H9V9 463 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 VAT1LQ9HCJ6 419 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 RNF146Q9NTX7 359 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 CCPG1Q9ULG6 757 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 BRCA2P51587 3418 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 PLXNA1Q9UIW2 1896 aa11.32□□□□□ -0.6
HDAC3-208ENST00000476739 BAZ2BQ9UIF8 2168 aaKnown RBP11.31□□□□□ -0.6
HDAC3-208ENST00000476739 KLRF2D3W0D1 207 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 EPB41L2O43491 1005 aaKnown RBP11.31□□□□□ -0.6
HDAC3-208ENST00000476739 CYTH3O43739 400 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 HMGCRP04035 888 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 CCL5P13501 91 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 COPB2P35606 906 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 KRT32Q14532 448 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 KCTD2Q14681 263 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 CDC37Q16543 378 aaPredicted RBP11.31□□□□□ -0.6
HDAC3-208ENST00000476739 QRICH1Q2TAL8 776 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 C8orf34Q49A92 452 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 NFXL1Q6ZNB6 911 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 CATIPQ7Z7H3 387 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 CCDC144CPQ8IYA2 1237 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 ABRAQ8N0Z2 381 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 CHST13Q8NET6 341 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 BRPF3Q9ULD4 1205 aa11.31□□□□□ -0.6
HDAC3-208ENST00000476739 KIAA0100Q14667 2235 aaKnown RBP11.31□□□□□ -0.6
HDAC3-208ENST00000476739 DNAJC25-GNG10A0A024R161 153 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 CCDC69A6NI79 296 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 NFIBO00712 420 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 DDAH1O94760 285 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 PRKAR2AP13861 404 aaKnown RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 PRKCSHP14314 528 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 EN2P19622 333 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 CASTP20810 708 aaKnown RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 CCND3P30281 292 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 CYP2C19P33261 490 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 UBXN2AP68543 259 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 CACNB2Q08289 660 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 ZNF792Q3KQV3 632 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 MAP3K21Q5TCX8 1036 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 SGMS1Q86VZ5 419 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 CMTR1Q8N1G2 835 aaKnown RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 TRPV1Q8NER1 839 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 CLEC4DQ8WXI8 215 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 MTMR8Q96EF0 704 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 MAML3Q96JK9 1138 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 FGD4Q96M96 766 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 PURBQ96QR8 312 aaKnown RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 RNF208Q9H0X6 261 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 ACAD9Q9H845 621 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 A1CFQ9NQ94 594 aaKnown RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 LCTP09848 1927 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 RBBP6Q7Z6E9 1792 aaKnown RBP11.3□□□□□ -0.6
HDAC3-208ENST00000476739 WDR19Q8NEZ3 1342 aa11.3□□□□□ -0.6
HDAC3-208ENST00000476739 MYH6P13533 1939 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 DHX16O60231 1041 aaKnown RBP11.29□□□□□ -0.6
HDAC3-208ENST00000476739 PPP1R11O60927 126 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-208ENST00000476739 PLEKHA8P1O95397 391 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 RPS6KB1P23443 525 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 CNTN2Q02246 1040 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 TKFCQ3LXA3 575 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 USH1GQ495M9 461 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 PRAMEF19Q5SWL8 479 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 BLOC1S2Q6QNY1 142 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 Q6ZUG5 572 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 MICU3Q86XE3 530 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 ANKRD35Q8N283 1001 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 TMTC2Q8N394 836 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms