RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CSGALNACT2Q8N6G5 542 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 PCDHA6Q9UN73 950 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 PCDHA8Q9Y5H6 950 aa15.46■□□□□ 0.07
CCDC88A-211ENST00000471947 MYO5AQ9Y4I1 1855 aaKnown RBP15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 EEF2P13639 858 aaKnown RBP15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 EPS15P42566 896 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 RBL2Q08999 1139 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 PAK1Q13153 545 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 TMEM266Q2M3C6 531 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 NEK8Q86SG6 692 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 CCDC150Q8NCX0 1101 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 FERMT2Q96AC1 680 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 CARD6Q9BX69 1037 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 DEF6Q9H4E7 631 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 PSTPIP2Q9H939 334 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 FAM207AQ9NSI2 230 aaPredicted RBP15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 SFI1A8K8P3 1242 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 MATR3P43243 847 aaKnown RBP eCLIP15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 STK32BQ9NY57 414 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 BCS1LQ9Y276 419 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 SAMM50Q9Y512 469 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 IPO7O95373 1038 aaKnown RBP15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 KRT9P35527 623 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 ACRBPQ8NEB7 543 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 TCEAL9Q9UHQ7 104 aa15.45■□□□□ 0.06
CCDC88A-211ENST00000471947 A0A0U1RQJ8 604 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 ACTN4O43707 911 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 OR52Z1P0C646 297 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 RBM43Q6ZSC3 357 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 TOGARAM2Q6ZUX3 1019 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 ANKRD13CQ8N6S4 541 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 ATRIPQ8WXE1 791 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 CAPZA3Q96KX2 299 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 BAZ2AQ9UIF9 1905 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 STK36Q9NRP7 1315 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 TFRCP02786 760 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 PRCPP42785 496 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 KRT79Q5XKE5 535 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 SRGNP10124 158 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 NPR1P16066 1061 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 CCZ1BP86790 482 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 CCZ1P86791 482 aaPredicted RBP15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 MORC3Q14149 939 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 TDRD12Q587J7 1177 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 ZNF569Q5MCW4 686 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 SPECC1LQ69YQ0 1117 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 ADGRF4Q8IZF3 695 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 UBXN4Q92575 508 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 PPP1R13BQ96KQ4 1090 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 MYH2Q9UKX2 1941 aa15.44■□□□□ 0.06
CCDC88A-211ENST00000471947 PSMA7O14818 248 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 MRPS25P82663 173 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 KCTD19Q17RG1 926 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 KIAA1328Q86T90 577 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 NLRC4Q9NPP4 1024 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 ANAPC4Q9UJX5 808 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 HPSEQ9Y251 543 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 ATP6V0A2Q9Y487 856 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 DYNC1I1O14576 645 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 MYO1BO43795 1136 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 CASQ1P31415 396 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 DPYDQ12882 1025 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 IL17AQ16552 155 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 CCDC43Q96MW1 224 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 TOGARAM1Q9Y4F4 1720 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 B4DLN1 442 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 SLC35G1Q2M3R5 365 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 KMT5BQ4FZB7 885 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 CCDC40Q4G0X9 1142 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 MASTLQ96GX5 879 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 COA1Q9GZY4 146 aa15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.43■□□□□ 0.06
CCDC88A-211ENST00000471947 SPATA31A6Q5VVP1 1343 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 TTLL1O95922 423 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 TBC1D8BQ0IIM8 1120 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 FUT2Q10981 343 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 GRM4Q14833 912 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 CDAN1Q8IWY9 1227 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 PRMT6Q96LA8 375 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 PRIMPOLQ96LW4 560 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 GDAP1L1Q96MZ0 367 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 NPHP3-ACAD11A0A0J9YXS1 232 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 MACROD2A1Z1Q3 448 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 SPDYE3A6NKU9 549 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 KCNJ18B7U540 433 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 AKR1B15C9JRZ8 316 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 RNASE9P60153 205 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 KCNJ12Q14500 433 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 DLGAP5Q15398 846 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 E4F1Q66K89 784 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 RDH13Q8NBN7 331 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 MTMR4Q9NYA4 1195 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 GPR75-ASB3A0A0A6YYF3 556 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 POLR3GO15318 223 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 BMP15O95972 392 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 PDHBP11177 359 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 RHBDL3P58872 404 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 PABPC4Q13310 644 aaKnown RBP eCLIP15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 PPP2R5BQ15173 497 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms