RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 SLC4A8Q2Y0W8 1093 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 CERKLQ49MI3 558 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-208ENST00000468792 PPP4R3AQ6IN85 833 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 PDXDC2PQ6P474 469 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 USP49Q70CQ1 688 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 CCDC186Q7Z3E2 898 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 NEK8Q86SG6 692 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 REXO1Q8N1G1 1221 aaKnown RBP8.64□□□□□ -1.03
COL6A3-208ENST00000468792 GPKOWQ92917 476 aaPredicted RBP eCLIP8.64□□□□□ -1.03
COL6A3-208ENST00000468792 GMCL1Q96IK5 515 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 EPSTI1Q96J88 318 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 PIGSQ96S52 555 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 HSD3B7Q9H2F3 369 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 KCNF1Q9H3M0 494 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 DNAJC18Q9H819 358 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 JMJD4Q9H9V9 463 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 RIC8AQ9NPQ8 531 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 RMND1Q9NWS8 449 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 HDAC9Q9UKV0 1011 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 A0A087X0B3 334 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 DDTLA6NHG4 134 aaPredicted RBP8.63□□□□□ -1.03
COL6A3-208ENST00000468792 GOLGA8HP0CJ92 632 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 GCFC2P16383 781 aaKnown RBP8.63□□□□□ -1.03
COL6A3-208ENST00000468792 ZNF18P17022 549 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 MCM7P33993 719 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 MRPL12P52815 198 aaKnown RBP8.63□□□□□ -1.03
COL6A3-208ENST00000468792 MAP3K10Q02779 954 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 TRAF1Q13077 416 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 KCNB1Q14721 858 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 CFAP100Q494V2 611 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 NOM1Q5C9Z4 860 aaKnown RBP8.63□□□□□ -1.03
COL6A3-208ENST00000468792 SPECC1Q5M775 1068 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 MOXD1Q6UVY6 613 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 BTNL9Q6UXG8 535 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 SH3BP5LQ7L8J4 393 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 FAM83AQ86UY5 434 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 ZFPM1Q8IX07 1006 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 DRC7Q8IY82 874 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 ADGRF4Q8IZF3 695 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 FBXO41Q8TF61 875 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 FAM151AQ8WW52 585 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 ERCC4Q92889 916 aaPredicted RBP8.63□□□□□ -1.03
COL6A3-208ENST00000468792 TTC12Q9H892 705 aaPredicted RBP8.63□□□□□ -1.03
COL6A3-208ENST00000468792 DISC1Q9NRI5 854 aa8.63□□□□□ -1.03
COL6A3-208ENST00000468792 BIN1O00499 593 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 ADAMTS3O15072 1205 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 C21orf2O43822 256 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 PLA2G6O60733 806 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 OR52Z1P0C646 297 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 PPP1R2P41236 205 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 FXR2P51116 673 aaKnown RBP eCLIP8.62□□□□□ -1.03
COL6A3-208ENST00000468792 ADCY7P51828 1080 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 RBM5P52756 815 aaKnown RBP eCLIP8.62□□□□□ -1.03
COL6A3-208ENST00000468792 FANCCQ00597 558 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 INF2Q27J81 1249 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 COBLL1Q53SF7 1204 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 CNNM4Q6P4Q7 775 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 SIAH1Q8IUQ4 282 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 LRRC8AQ8IWT6 810 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 OGFOD1Q8N543 542 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 IGSF22Q8N9C0 903 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 CCDC150Q8NCX0 1101 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 DHX58Q96C10 678 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 ZBED3Q96IU2 234 aaPredicted RBP8.62□□□□□ -1.03
COL6A3-208ENST00000468792 PRMT6Q96LA8 375 aaPredicted RBP8.62□□□□□ -1.03
COL6A3-208ENST00000468792 MTMR9Q96QG7 549 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 TRIM34Q9BYJ4 488 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 GINM1Q9NU53 330 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 KBTBD4Q9NVX7 518 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 TMOD2Q9NZR1 351 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 ZNRF3Q9ULT6 936 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 MYH4Q9Y623 1939 aa8.62□□□□□ -1.03
COL6A3-208ENST00000468792 ADAMTSL1Q8N6G6 1762 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 CYP3A7-CYP3A51PA0A087WV96 503 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 LRRC10BA6NIK2 292 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 FOXN1O15353 648 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 TUBB4AP04350 444 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 EEF2P13639 858 aaKnown RBP8.61□□□□□ -1.03
COL6A3-208ENST00000468792 DPEP1P16444 411 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 PTGS1P23219 599 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 CYP3A7P24462 503 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 UBA7P41226 1012 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 USP11P51784 963 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 AP3B2Q13367 1082 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 CUL4BQ13620 913 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 ABCB5Q2M3G0 1257 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 RBM26Q5T8P6 1007 aaKnown RBP8.61□□□□□ -1.03
COL6A3-208ENST00000468792 SPATA1Q5VX52 437 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 SLFN13Q68D06 897 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 LRRC47Q8N1G4 583 aaKnown RBP8.61□□□□□ -1.03
COL6A3-208ENST00000468792 KCTD17Q8N5Z5 321 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 PDILTQ8N807 584 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 SPC24Q8NBT2 197 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 TBCKQ8TEA7 893 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 CUL5Q93034 780 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 MBOAT7Q96N66 472 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 CTAGE1Q96RT6 745 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 RAB34Q9BZG1 259 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 XPO4Q9C0E2 1151 aaKnown RBP8.61□□□□□ -1.03
COL6A3-208ENST00000468792 UBA5Q9GZZ9 404 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms