RNA–Protein interactions for RNA: ENST00000468143.1

CDHR3-205, Transcript of cadherin related family member 3, humanhuman

TSL 4

Gene CDHR3, Length 575 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-205ENST00000468143 KAT14Q9H8E8 782 aa13.56□□□□□ -0.24
CDHR3-205ENST00000468143 CNNM2Q9H8M5 875 aa13.56□□□□□ -0.24
CDHR3-205ENST00000468143 RNF146Q9NTX7 359 aa13.56□□□□□ -0.24
CDHR3-205ENST00000468143 FBXO40Q9UH90 709 aa13.56□□□□□ -0.24
CDHR3-205ENST00000468143 DIS3Q9Y2L1 958 aaKnown RBP13.56□□□□□ -0.24
CDHR3-205ENST00000468143 U3KPZ7 1027 aaPredicted RBP13.56□□□□□ -0.24
CDHR3-205ENST00000468143 TNKSO95271 1327 aa13.56□□□□□ -0.24
CDHR3-205ENST00000468143 DNAJC25-GNG10A0A024R161 153 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 ZNF543Q08ER8 600 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 CCDC178Q5BJE1 867 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 MUM1L1Q5H9M0 696 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 BTNL9Q6UXG8 535 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 ENAHQ8N8S7 591 aaPredicted RBP13.55□□□□□ -0.24
CDHR3-205ENST00000468143 PNMA1Q8ND90 353 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 UBAC1Q9BSL1 405 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 RANBP17Q9H2T7 1088 aaKnown RBP13.55□□□□□ -0.24
CDHR3-205ENST00000468143 ACAD9Q9H845 621 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 CCPG1Q9ULG6 757 aa13.55□□□□□ -0.24
CDHR3-205ENST00000468143 E7EWF7 191 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 SEPT4O43236 478 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 EVI5O60447 810 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 SNHG28P0DPA3 235 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 CNTN2Q02246 1040 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 TRDNQ13061 729 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 GJC2Q5T442 439 aaPredicted RBP13.54□□□□□ -0.24
CDHR3-205ENST00000468143 KIAA1211Q6ZU35 1233 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 STOX1Q6ZVD7 989 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 CHST3Q7LGC8 479 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 ANKS1AQ92625 1134 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 MAP4K1Q92918 833 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 ESYT1Q9BSJ8 1104 aa13.54□□□□□ -0.24
CDHR3-205ENST00000468143 A1CFQ9NQ94 594 aaKnown RBP13.54□□□□□ -0.24
CDHR3-205ENST00000468143 RBM8AQ9Y5S9 174 aaKnown RBP13.54□□□□□ -0.24
CDHR3-205ENST00000468143 POTEB2H3BUK9 544 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 MSCO60682 206 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 SNAI1O95863 264 aaPredicted RBP13.53□□□□□ -0.24
CDHR3-205ENST00000468143 ICAM1P05362 532 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 TKFCQ3LXA3 575 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 BMP2KLQ5H9B9 411 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 IFIT1BQ5T764 474 aaKnown RBP13.53□□□□□ -0.24
CDHR3-205ENST00000468143 NSMFQ6X4W1 530 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 FGD4Q96M96 766 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 PURBQ96QR8 312 aaKnown RBP13.53□□□□□ -0.24
CDHR3-205ENST00000468143 SENP6Q9GZR1 1112 aaPredicted RBP13.53□□□□□ -0.24
CDHR3-205ENST00000468143 VAT1LQ9HCJ6 419 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 CNPY2Q9Y2B0 182 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 DDX49Q9Y6V7 483 aaKnown RBP13.53□□□□□ -0.24
CDHR3-205ENST00000468143 PFASO15067 1338 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 BRCA2P51587 3418 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 ZNF236Q9UL36 1845 aa13.53□□□□□ -0.24
CDHR3-205ENST00000468143 SOWAHBA6NEL2 793 aa13.52□□□□□ -0.25
CDHR3-205ENST00000468143 NEFLP07196 543 aa13.52□□□□□ -0.25
CDHR3-205ENST00000468143 ZNF865P0CJ78 1059 aaPredicted RBP13.52□□□□□ -0.25
CDHR3-205ENST00000468143 COL6A1P12109 1028 aa13.52□□□□□ -0.25
CDHR3-205ENST00000468143 NT5C2P49902 561 aa13.52□□□□□ -0.25
CDHR3-205ENST00000468143 SEC23AQ15436 765 aa13.52□□□□□ -0.25
CDHR3-205ENST00000468143 NCOA7Q8NI08 942 aa13.52□□□□□ -0.25
CDHR3-205ENST00000468143 LENG1Q96BZ8 264 aaPredicted RBP13.52□□□□□ -0.25
CDHR3-205ENST00000468143 LSG1Q9H089 658 aaKnown RBP13.52□□□□□ -0.25
CDHR3-205ENST00000468143 SENP2Q9HC62 589 aa13.52□□□□□ -0.25
CDHR3-205ENST00000468143 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.52□□□□□ -0.25
CDHR3-205ENST00000468143 ZHX1Q9UKY1 873 aaPredicted RBP13.52□□□□□ -0.25
CDHR3-205ENST00000468143 NR2E3Q9Y5X4 410 aa13.52□□□□□ -0.25
CDHR3-205ENST00000468143 TNRC18O15417 2968 aaPredicted RBP13.52□□□□□ -0.25
CDHR3-205ENST00000468143 IFIT3O14879 490 aaKnown RBP13.51□□□□□ -0.25
CDHR3-205ENST00000468143 GPATCH4Q5T3I0 446 aaKnown RBP13.51□□□□□ -0.25
CDHR3-205ENST00000468143 MAMDC4Q6UXC1 1216 aa13.51□□□□□ -0.25
CDHR3-205ENST00000468143 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.51□□□□□ -0.25
CDHR3-205ENST00000468143 RALYLQ86SE5 291 aaKnown RBP13.51□□□□□ -0.25
CDHR3-205ENST00000468143 C7orf61Q8IZ16 206 aa13.51□□□□□ -0.25
CDHR3-205ENST00000468143 ADGRF4Q8IZF3 695 aa13.51□□□□□ -0.25
CDHR3-205ENST00000468143 FAM133AQ8N9E0 248 aa13.51□□□□□ -0.25
CDHR3-205ENST00000468143 ANO2Q9NQ90 1003 aa13.51□□□□□ -0.25
CDHR3-205ENST00000468143 CYP39A1Q9NYL5 469 aa13.51□□□□□ -0.25
CDHR3-205ENST00000468143 SYNGAP1Q96PV0 1343 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 NFIBO00712 420 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 DHX16O60231 1041 aaKnown RBP13.5□□□□□ -0.25
CDHR3-205ENST00000468143 PGK1P00558 417 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 PARP1P09874 1014 aaKnown RBP13.5□□□□□ -0.25
CDHR3-205ENST00000468143 RARBP10826 455 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 ATN1P54259 1190 aaPredicted RBP13.5□□□□□ -0.25
CDHR3-205ENST00000468143 ACVR2BQ13705 512 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 BAATQ14032 418 aaPredicted RBP13.5□□□□□ -0.25
CDHR3-205ENST00000468143 LRRC26Q2I0M4 334 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 USH1GQ495M9 461 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 ARMCX2Q7L311 632 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 ZNF467Q7Z7K2 595 aaPredicted RBP13.5□□□□□ -0.25
CDHR3-205ENST00000468143 CCDC144CPQ8IYA2 1237 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 STAG2Q8N3U4 1231 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 MSL3Q8N5Y2 521 aaKnown RBP13.5□□□□□ -0.25
CDHR3-205ENST00000468143 ARRDC4Q8NCT1 418 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 FERMT2Q96AC1 680 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 XPNPEP3Q9NQH7 507 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 NRBP1Q9UHY1 535 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 FAM184BQ9ULE4 1060 aa13.5□□□□□ -0.25
CDHR3-205ENST00000468143 ZMYND8Q9ULU4 1186 aaPredicted RBP13.5□□□□□ -0.25
CDHR3-205ENST00000468143 COLQQ9Y215 455 aaPredicted RBP13.5□□□□□ -0.25
CDHR3-205ENST00000468143 LAMA4Q16363 1823 aa13.49□□□□□ -0.25
CDHR3-205ENST00000468143 ERICH2A1L162 156 aa13.49□□□□□ -0.25
CDHR3-205ENST00000468143 PTPDC1A2A3K4 754 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms