RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 GRIN3BO60391 1043 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 STAMBPO95630 424 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 WWC2Q6AWC2 1192 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 C2CD5Q86YS7 1000 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 TRIM47Q96LD4 638 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 CEP63Q96MT8 703 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 SELENOSQ9BQE4 189 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 ZKSCAN3Q9BRR0 538 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 PLCB1Q9NQ66 1216 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 GSTTP1A0A1W2PQM5 241 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 PRKAB2O43741 272 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 GYS1P13807 737 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 ALDH3A1P30838 453 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 RILPL1Q5EBL4 403 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 SARM1Q6SZW1 724 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 SGMS1Q86VZ5 419 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 TBC1D10CQ8IV04 446 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 FANCBQ8NB91 859 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 MICAL1Q8TDZ2 1067 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 XPO4Q9C0E2 1151 aaKnown RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 FAM204AQ9H8W3 233 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 ZSWIM5Q9P217 1185 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 MTMR7Q9Y216 660 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 JAG2Q9Y219 1238 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 TNKSO95271 1327 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 NUP188Q5SRE5 1749 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 EIF3CLB5ME19 914 aaKnown RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 PSMA7O14818 248 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 CTIFO43310 598 aaKnown RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 STX10O60499 249 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 IDEP14735 1019 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 IRX1P78414 480 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 GRIPAP1Q4V328 841 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 EAPPQ56P03 285 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 INTS8Q75QN2 995 aaKnown RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 HOOK2Q96ED9 719 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 RAB3IPQ96QF0 476 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 EIF3CQ99613 913 aaKnown RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 ZNF408Q9H9D4 720 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 CABP5Q9NP86 173 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 CDC23Q9UJX2 597 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 SUGT1Q9Y2Z0 365 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 BICDL2A1A5D9 508 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 PLSCR1O15162 318 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 KRT2P35908 639 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 KRT40Q6A162 431 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 CCHCR1Q8TD31 782 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 TBC1D31Q96DN5 1066 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 NUP58Q9BVL2 599 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 PLVAPQ9BX97 442 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 AGXT2Q9BYV1 514 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 RAB34Q9BZG1 259 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 BIN2Q9UBW5 565 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 MTRF1LQ9UGC7 380 aaKnown RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 STX8Q9UNK0 236 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 RXRAP19793 462 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 DYNLL1P63167 89 aaKnown RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 ANO1Q5XXA6 986 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 CCDC26Q8TAB7 109 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 TGFBRAP1Q8WUH2 860 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 NSUN4Q96CB9 384 aaKnown RBP6.88□□□□□ -1.31
VPS13D-202ENST00000460333 CD209Q9NNX6 404 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 PSD3Q9NYI0 1048 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 STK36Q9NRP7 1315 aa6.88□□□□□ -1.31
VPS13D-202ENST00000460333 TCRBV5S4A2TA0A5A2 114 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 CHGBP05060 677 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 MMP10P09238 476 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 IFNAR1P17181 557 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 CCT5P48643 541 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 GTF2IP78347 998 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 CCDC174Q6PII3 467 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 ZNF365Q70YC5 407 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 BAIAP2L1Q9UHR4 511 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 CCDC194A0A1B0GVG4 234 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 LRRD1A4D1F6 860 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 FMNL1O95466 1100 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 BTDP43251 543 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 GPSM2P81274 684 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 RESTQ13127 1097 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 SND1Q7KZF4 910 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 SRLQ86TD4 932 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 CACTINQ8WUQ7 758 aaKnown RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 STMN2Q93045 179 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 RNF26Q9BY78 433 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 ANAPC4Q9UJX5 808 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 NRAPQ86VF7 1730 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 E7EVH7 732 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 ADD1P35611 737 aaKnown RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 CLUL1Q15846 466 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 MYSM1Q5VVJ2 828 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 CEP128Q6ZU80 1094 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 RNF10Q8N5U6 811 aaKnown RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 N4BP2L2Q92802 583 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 TEKT1Q969V4 418 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 JAKMIP2Q96AA8 810 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 SEPT11Q9NVA2 429 aaKnown RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 LARSQ9P2J5 1176 aaKnown RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 A0A1W2PRG0 241 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 TRIM75PA6NK02 468 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms