RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	COBL	O75128	1261 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	PGK2	P07205	417 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	FCER1A	P12319	257 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	RRP12	Q5JTH9	1297 aa	Known RBP	10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	HABP4	Q5JVS0	413 aa	Known RBP	10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	CHD1L	Q86WJ1	897 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	SMC5	Q8IY18	1101 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	CPXCR1	Q8N123	301 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	SHCBP1	Q8NEM2	672 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	KIFC2	Q96AC6	838 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	MMP19	Q99542	508 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	SLF1	Q9BQI6	1058 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	MROH8	Q9H579	483 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	C11orf49	Q9H6J7	331 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	OGDHL	Q9ULD0	1010 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	CTDP1	Q9Y5B0	961 aa	Predicted RBP	10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	NR2E3	Q9Y5X4	410 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	LCT	P09848	1927 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	PLIN4	Q96Q06	1357 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	TSPY2	A6NKD2	308 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	STRN	O43815	780 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	NMT2	O60551	498 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	TTLL1	O95922	423 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	HOXC6	P09630	235 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	STAT3	P40763	770 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	HAND2	P61296	217 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	NUCB1	Q02818	461 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	IK	Q13123	557 aa	Predicted RBP	10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	AAMP	Q13685	434 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	SNRNP48	Q6IEG0	339 aa	Known RBP	10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	ZNF589	Q86UQ0	364 aa	Predicted RBP	10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	RIOX2	Q8IUF8	465 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	ANKLE1	Q8NAG6	615 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	TRPV1	Q8NER1	839 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	NEDD1	Q8NHV4	660 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	NBPF3	Q9H094	633 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	HELLS	Q9NRZ9	838 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	MTMR4	Q9NYA4	1195 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	STX8	Q9UNK0	236 aa		10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	RANBP2	P49792	3224 aa	Known RBP	10.29	□□□□□ -0.76
RFX3-209	ENST00000451859	SLC25A27	O95847	323 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	KCTD2	Q14681	263 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	MCMDC2	Q4G0Z9	681 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	PRAMEF19	Q5SWL8	479 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	SLFN13	Q68D06	897 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	RASGRP2	Q7LDG7	609 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	PLEKHM2	Q8IWE5	1019 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	REPS2	Q8NFH8	660 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	SLC5A4	Q9NY91	659 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	DDX20	Q9UHI6	824 aa	Known RBP	10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	ZNF214	Q9UL59	606 aa	Predicted RBP	10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	ADAMTS5	Q9UNA0	930 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	TACC3	Q9Y6A5	838 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	PFAS	O15067	1338 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	CCDC171	Q6TFL3	1326 aa		10.28	□□□□□ -0.76
RFX3-209	ENST00000451859	TMEM232	C9JQI7	657 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	ZBED4	O75132	1171 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	BMP3	P12645	472 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	CYBA	P13498	195 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	SYN1	P17600	705 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	CAPN2	P17655	700 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	ZNF454	Q8N9F8	522 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	PRPF38A	Q8NAV1	312 aa	Known RBP	10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	MAML3	Q96JK9	1138 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	ZBED2	Q9BTP6	218 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	TEX13B	Q9BXU2	312 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	RAVER2	Q9HCJ3	691 aa	Known RBP	10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	HOMER2	Q9NSB8	354 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	RBM27	Q9P2N5	1060 aa	Known RBP	10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	RIPK3	Q9Y572	518 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	LRRC37A2	A6NM11	1700 aa		10.27	□□□□□ -0.77
RFX3-209	ENST00000451859	LTBP2	Q14767	1821 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	FGA	P02671	866 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	HSPD1	P10809	573 aa	Known RBP	10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	SDS	P20132	328 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	MCC	P23508	829 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	SNAP25	P60880	206 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	CCDC96	Q2M329	555 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	GJC2	Q5T442	439 aa	Predicted RBP	10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	OLFML2B	Q68BL8	750 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	CWC27	Q6UX04	472 aa	Known RBP	10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	KCTD1	Q719H9	257 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	ABRA	Q8N0Z2	381 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	GMCL1P1	Q8NEA9	526 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	MKL1	Q969V6	931 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	DDX11	Q96FC9	970 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	SENP6	Q9GZR1	1112 aa	Predicted RBP	10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	DIAPH3	Q9NSV4	1193 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	FEM1B	Q9UK73	627 aa		10.26	□□□□□ -0.77
RFX3-209	ENST00000451859	MSC	O60682	206 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	COPB2	P35606	906 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	SLC1A4	P43007	532 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	FXR1	P51114	621 aa	Known RBP eCLIP	10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	STAT2	P52630	851 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	FOSB	P53539	338 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	ALX1	Q15699	326 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	LRRC26	Q2I0M4	334 aa		10.25	□□□□□ -0.77
RFX3-209	ENST00000451859	CCDC174	Q6PII3	467 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms