RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 MNX1P50219 401 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-210ENST00000449684 TRDNQ13061 729 aa18.22■□□□□ 0.51
LIMS1-210ENST00000449684 SYDE2Q5VT97 1194 aa18.22■□□□□ 0.51
LIMS1-210ENST00000449684 CHRDL2Q6WN34 429 aa18.22■□□□□ 0.51
LIMS1-210ENST00000449684 RASGRP2Q7LDG7 609 aa18.22■□□□□ 0.51
LIMS1-210ENST00000449684 DGKHQ86XP1 1220 aa18.22■□□□□ 0.51
LIMS1-210ENST00000449684 MSL3Q8N5Y2 521 aaKnown RBP18.22■□□□□ 0.51
LIMS1-210ENST00000449684 TRERF1Q96PN7 1200 aa18.22■□□□□ 0.51
LIMS1-210ENST00000449684 KAT14Q9H8E8 782 aa18.22■□□□□ 0.51
LIMS1-210ENST00000449684 CCPG1Q9ULG6 757 aa18.22■□□□□ 0.51
LIMS1-210ENST00000449684 COLQQ9Y215 455 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-210ENST00000449684 PLXNA1Q9UIW2 1896 aa18.21■□□□□ 0.51
LIMS1-210ENST00000449684 POTEB2H3BUK9 544 aa18.21■□□□□ 0.51
LIMS1-210ENST00000449684 DNM1LO00429 736 aa18.21■□□□□ 0.51
LIMS1-210ENST00000449684 RARBP10826 455 aa18.21■□□□□ 0.51
LIMS1-210ENST00000449684 HABP4Q5JVS0 413 aaKnown RBP18.21■□□□□ 0.51
LIMS1-210ENST00000449684 GJC2Q5T442 439 aaPredicted RBP18.21■□□□□ 0.51
LIMS1-210ENST00000449684 TTBK2Q6IQ55 1244 aa18.21■□□□□ 0.51
LIMS1-210ENST00000449684 UBAC1Q9BSL1 405 aa18.21■□□□□ 0.51
LIMS1-210ENST00000449684 PDHBP11177 359 aa18.2■□□□□ 0.5
LIMS1-210ENST00000449684 ZSCAN10Q96SZ4 725 aaPredicted RBP18.2■□□□□ 0.5
LIMS1-210ENST00000449684 IL25Q9H293 177 aa18.2■□□□□ 0.5
LIMS1-210ENST00000449684 ZHX1Q9UKY1 873 aaPredicted RBP18.2■□□□□ 0.5
LIMS1-210ENST00000449684 U3KPZ7 1027 aaPredicted RBP18.2■□□□□ 0.5
LIMS1-210ENST00000449684 PFASO15067 1338 aa18.2■□□□□ 0.5
LIMS1-210ENST00000449684 SYNGAP1Q96PV0 1343 aa18.2■□□□□ 0.5
LIMS1-210ENST00000449684 DNAJC25-GNG10A0A024R161 153 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 ICAM1P05362 532 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 COL6A1P12109 1028 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 AKR1A1P14550 325 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 GPATCH4Q5T3I0 446 aaKnown RBP18.19■□□□□ 0.5
LIMS1-210ENST00000449684 BTNL9Q6UXG8 535 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 KIAA1211Q6ZU35 1233 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.19■□□□□ 0.5
LIMS1-210ENST00000449684 CENPQQ7L2Z9 268 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-210ENST00000449684 ZNF467Q7Z7K2 595 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-210ENST00000449684 PNMA1Q8ND90 353 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 XPNPEP3Q9NQH7 507 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 ZSWIM5Q9P217 1185 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 PNMA2Q9UL42 364 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 FAM184BQ9ULE4 1060 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 ZNF536O15090 1300 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 LAMA4Q16363 1823 aa18.19■□□□□ 0.5
LIMS1-210ENST00000449684 TAL1P17542 331 aaPredicted RBP18.18■□□□□ 0.5
LIMS1-210ENST00000449684 ATN1P54259 1190 aaPredicted RBP18.18■□□□□ 0.5
LIMS1-210ENST00000449684 ZNF543Q08ER8 600 aa18.18■□□□□ 0.5
LIMS1-210ENST00000449684 NSMFQ6X4W1 530 aa18.18■□□□□ 0.5
LIMS1-210ENST00000449684 RNF180Q86T96 592 aa18.18■□□□□ 0.5
LIMS1-210ENST00000449684 RANBP17Q9H2T7 1088 aaKnown RBP18.18■□□□□ 0.5
LIMS1-210ENST00000449684 A1CFQ9NQ94 594 aaKnown RBP18.18■□□□□ 0.5
LIMS1-210ENST00000449684 ZMYND8Q9ULU4 1186 aaPredicted RBP18.18■□□□□ 0.5
LIMS1-210ENST00000449684 TNKSO95271 1327 aa18.18■□□□□ 0.5
LIMS1-210ENST00000449684 FRMPD3Q5JV73 1810 aa18.17■□□□□ 0.5
LIMS1-210ENST00000449684 SGSM2O43147 1006 aa18.17■□□□□ 0.5
LIMS1-210ENST00000449684 GOLGA8HP0CJ92 632 aa18.17■□□□□ 0.5
LIMS1-210ENST00000449684 CNTN2Q02246 1040 aa18.17■□□□□ 0.5
LIMS1-210ENST00000449684 IFIT1BQ5T764 474 aaKnown RBP18.17■□□□□ 0.5
LIMS1-210ENST00000449684 MAMDC4Q6UXC1 1216 aa18.17■□□□□ 0.5
LIMS1-210ENST00000449684 RALYLQ86SE5 291 aaKnown RBP18.17■□□□□ 0.5
LIMS1-210ENST00000449684 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.17■□□□□ 0.5
LIMS1-210ENST00000449684 ERICH2A1L162 156 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 DHX16O60231 1041 aaKnown RBP18.16■□□□□ 0.5
LIMS1-210ENST00000449684 SNAI1O95863 264 aaPredicted RBP18.16■□□□□ 0.5
LIMS1-210ENST00000449684 ZNF865P0CJ78 1059 aaPredicted RBP18.16■□□□□ 0.5
LIMS1-210ENST00000449684 SYN1P17600 705 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 PTH1RQ03431 593 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 ACVR2BQ13705 512 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 LRRC41Q15345 812 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 LRRC26Q2I0M4 334 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 MUM1L1Q5H9M0 696 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 ARMCX2Q7L311 632 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 ENAHQ8N8S7 591 aaPredicted RBP18.16■□□□□ 0.5
LIMS1-210ENST00000449684 ABHD16BQ9H3Z7 469 aa18.16■□□□□ 0.5
LIMS1-210ENST00000449684 ASB14A6NK59 587 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 PGK1P00558 417 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 SNHG28P0DPA3 235 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 CCDC144CPQ8IYA2 1237 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 ANKS1AQ92625 1134 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 FERMT2Q96AC1 680 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 UBA5Q9GZZ9 404 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 SPC25Q9HBM1 224 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 PRKAG2Q9UGJ0 569 aa18.15■□□□□ 0.5
LIMS1-210ENST00000449684 PTPDC1A2A3K4 754 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 CYP21A2P08686 494 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 PARP1P09874 1014 aaKnown RBP18.14■□□□□ 0.49
LIMS1-210ENST00000449684 ADCYAP1R1P41586 468 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 SART3Q15020 963 aaKnown RBP18.14■□□□□ 0.49
LIMS1-210ENST00000449684 ASPRV1Q53RT3 343 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 NOL8Q76FK4 1167 aaKnown RBP18.14■□□□□ 0.49
LIMS1-210ENST00000449684 FAM133AQ8N9E0 248 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 NCOA7Q8NI08 942 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 CYP39A1Q9NYL5 469 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 RBM27Q9P2N5 1060 aaKnown RBP18.14■□□□□ 0.49
LIMS1-210ENST00000449684 ATP11BQ9Y2G3 1177 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 SMCHD1A6NHR9 2005 aa18.14■□□□□ 0.49
LIMS1-210ENST00000449684 ALPK3Q96L96 1907 aa18.13■□□□□ 0.49
LIMS1-210ENST00000449684 LENG1Q96BZ8 264 aaPredicted RBP18.13■□□□□ 0.49
LIMS1-210ENST00000449684 CCDC136Q96JN2 1154 aa18.13■□□□□ 0.49
LIMS1-210ENST00000449684 ADD3Q9UEY8 706 aaKnown RBP18.13■□□□□ 0.49
LIMS1-210ENST00000449684 SOWAHBA6NEL2 793 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms