RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ADAMTSL1Q8N6G6 1762 aa16.02■□□□□ 0.15
LIMD1-202ENST00000440097 SMCO2A6NFE2 343 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 SHMT1P34896 483 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 KANK3Q6NY19 840 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 SUPT20HQ8NEM7 779 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 TRERF1Q96PN7 1200 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 TULP2O00295 520 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 PNMA6AP0CW24 399 aaPredicted RBP16.01■□□□□ 0.15
LIMD1-202ENST00000440097 CCDC93Q567U6 631 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 TDRD3Q9H7E2 651 aaKnown RBP16.01■□□□□ 0.15
LIMD1-202ENST00000440097 PCDHA6Q9UN73 950 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 PCDHA8Q9Y5H6 950 aa16.01■□□□□ 0.15
LIMD1-202ENST00000440097 PLA2G4AP47712 749 aa16■□□□□ 0.15
LIMD1-202ENST00000440097 HNRNPH2P55795 449 aaKnown RBP16■□□□□ 0.15
LIMD1-202ENST00000440097 ARHGAP29Q52LW3 1261 aa16■□□□□ 0.15
LIMD1-202ENST00000440097 TTLL6Q8N841 843 aa16■□□□□ 0.15
LIMD1-202ENST00000440097 C6orf50Q9HD87 102 aa16■□□□□ 0.15
LIMD1-202ENST00000440097 DDTLA6NHG4 134 aaPredicted RBP16■□□□□ 0.15
LIMD1-202ENST00000440097 PDE4CQ08493 712 aa16■□□□□ 0.15
LIMD1-202ENST00000440097 BPIFA3Q9BQP9 254 aa16■□□□□ 0.15
LIMD1-202ENST00000440097 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16■□□□□ 0.15
LIMD1-202ENST00000440097 A0A087X0B3 334 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 ACTN4O43707 911 aaKnown RBP15.99■□□□□ 0.15
LIMD1-202ENST00000440097 GNA11P29992 359 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 CDC25AP30304 524 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 MAPK8IP2Q13387 824 aaPredicted RBP15.99■□□□□ 0.15
LIMD1-202ENST00000440097 CC2D2BQ6DHV5 1058 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 GALNT17Q6IS24 598 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 C7orf43Q8WVR3 580 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 STAMQ92783 540 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 DHX36Q9H2U1 1008 aaKnown RBP15.99■□□□□ 0.15
LIMD1-202ENST00000440097 RAD17O75943 681 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 BMP6P22004 513 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 NCAPHQ15003 741 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 R3HDM1Q15032 1099 aaKnown RBP15.99■□□□□ 0.15
LIMD1-202ENST00000440097 LETM2Q2VYF4 491 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 ASPRV1Q53RT3 343 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 HSP90AA4PQ58FG1 418 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 ARMCX5Q6P1M9 558 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 LARGE2Q8N3Y3 721 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.99■□□□□ 0.15
LIMD1-202ENST00000440097 PI4KBQ9UBF8 816 aa15.99■□□□□ 0.15
LIMD1-202ENST00000440097 CASP1P29466 404 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 SLC16A2P36021 539 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 TXLNAP40222 546 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 MDM2Q00987 491 aaPredicted RBP15.98■□□□□ 0.15
LIMD1-202ENST00000440097 MYL5Q02045 173 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 CFAP100Q494V2 611 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 CERKLQ49MI3 558 aaPredicted RBP15.98■□□□□ 0.15
LIMD1-202ENST00000440097 KCTD1Q719H9 257 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 TMC6Q7Z403 805 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 IFNKQ9P0W0 207 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 IMPACTQ9P2X3 320 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 SERPINA10Q9UK55 444 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 MAN1B1Q9UKM7 699 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 SCN9AQ15858 1988 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 JAKMIP3Q5VZ66 844 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 COA7Q96BR5 231 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 ZMYND12Q9H0C1 365 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 BIN2Q9UBW5 565 aaPredicted RBP15.98■□□□□ 0.15
LIMD1-202ENST00000440097 FAM198AQ9UFP1 575 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 MYH8P13535 1937 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 CCNT1O60563 726 aaKnown RBP15.98■□□□□ 0.15
LIMD1-202ENST00000440097 SERPINC1P01008 464 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 HDLBPQ00341 1268 aaKnown RBP15.98■□□□□ 0.15
LIMD1-202ENST00000440097 DTHD1Q6ZMT9 781 aa15.98■□□□□ 0.15
LIMD1-202ENST00000440097 XPO4Q9C0E2 1151 aaKnown RBP15.98■□□□□ 0.15
LIMD1-202ENST00000440097 ZNF277Q9NRM2 450 aaPredicted RBP15.98■□□□□ 0.15
LIMD1-202ENST00000440097 FOCADQ5VW36 1801 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 PLIN4Q96Q06 1357 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 YDJCA8MPS7 323 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 FKBP1AP62942 108 aaKnown RBP15.97■□□□□ 0.15
LIMD1-202ENST00000440097 SHROOM1Q2M3G4 852 aaPredicted RBP15.97■□□□□ 0.15
LIMD1-202ENST00000440097 REXO1Q8N1G1 1221 aaKnown RBP15.97■□□□□ 0.15
LIMD1-202ENST00000440097 IQUBQ8NA54 791 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 CCDC150Q8NCX0 1101 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 CCDC17Q96LX7 622 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 GDF11O95390 407 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 SLC20A2Q08357 652 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 NONOQ15233 471 aaKnown RBP eCLIP15.97■□□□□ 0.15
LIMD1-202ENST00000440097 TTBK2Q6IQ55 1244 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 DAGLBQ8NCG7 672 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 HSD3B7Q9H2F3 369 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 DNAJC18Q9H819 358 aa15.97■□□□□ 0.15
LIMD1-202ENST00000440097 IKBKBO14920 756 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 POLR3GO15318 223 aaPredicted RBP15.96■□□□□ 0.15
LIMD1-202ENST00000440097 ZRANB2O95218 330 aaKnown RBP eCLIP15.96■□□□□ 0.15
LIMD1-202ENST00000440097 ATP1A3P13637 1013 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 DPEP1P16444 411 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 SFPQP23246 707 aaKnown RBP eCLIP15.96■□□□□ 0.15
LIMD1-202ENST00000440097 IL17AQ16552 155 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 KLHL10Q6JEL2 608 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 KRT25Q7Z3Z0 450 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 PRMT6Q96LA8 375 aaPredicted RBP15.96■□□□□ 0.15
LIMD1-202ENST00000440097 MRIQ9BWK5 157 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 EHD4Q9H223 541 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 TMOD2Q9NZR1 351 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 DACH1Q9UI36 760 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 QSER1Q2KHR3 1735 aa15.96■□□□□ 0.15
LIMD1-202ENST00000440097 IGKV6D-41A0A0C4DH26 115 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms