RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ANP32AP39687 249 aaKnown RBP14.29□□□□□ -0.12
PTPRF-208ENST00000437607 EPHB4P54760 987 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 ANAPC15P60006 121 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 IMMTQ16891 758 aaKnown RBP14.29□□□□□ -0.12
PTPRF-208ENST00000437607 ZNF697Q5TEC3 545 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 CREB3L3Q68CJ9 461 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.29□□□□□ -0.124e-6■■■■■ 36.3
PTPRF-208ENST00000437607 AMOTL1Q8IY63 956 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 NUP88Q99567 741 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-208ENST00000437607 CDX2Q99626 313 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-208ENST00000437607 TTYH1Q9H313 450 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-208ENST00000437607 SEMA6BQ9H3T3 888 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 GOPCQ9HD26 462 aa14.29□□□□□ -0.12
PTPRF-208ENST00000437607 A0A1W2PQ45 241 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-208ENST00000437607 A0A1W2PQY0 241 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 GSG1L2A8MUP6 293 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 PATL2C9JE40 543 aaKnown RBP14.28□□□□□ -0.12
PTPRF-208ENST00000437607 SLC27A2O14975 620 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 FOXP2O15409 715 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 KCTD2Q14681 263 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 SBK1Q52WX2 424 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 GIMAP6Q6P9H5 292 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 STK11IPQ8N1F8 1099 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 CHD7Q9P2D1 2997 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 ARPP21Q9UBL0 812 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-208ENST00000437607 RIPK3Q9Y572 518 aa14.28□□□□□ -0.12
PTPRF-208ENST00000437607 MUC3AQ02505 3323 aa14.27□□□□□ -0.12
PTPRF-208ENST00000437607 DNAJC25-GNG10A0A024R161 153 aa14.27□□□□□ -0.13
PTPRF-208ENST00000437607 IGKV6D-41A0A0C4DH26 115 aa14.27□□□□□ -0.13
PTPRF-208ENST00000437607 RAD21O60216 631 aa14.27□□□□□ -0.13
PTPRF-208ENST00000437607 SNAI1O95863 264 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-208ENST00000437607 CLTBP09497 229 aa14.27□□□□□ -0.13
PTPRF-208ENST00000437607 KRT32Q14532 448 aa14.27□□□□□ -0.13
PTPRF-208ENST00000437607 ALX1Q15699 326 aa14.27□□□□□ -0.13
PTPRF-208ENST00000437607 RNF180Q86T96 592 aa14.27□□□□□ -0.13
PTPRF-208ENST00000437607 IFNL3Q8IZI9 196 aa14.27□□□□□ -0.13
PTPRF-208ENST00000437607 SYNRGQ9UMZ2 1314 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 F5H6K3 240 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 KIAA0355O15063 1070 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 NDUFB10O96000 172 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 FGAP02671 866 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 AKR1A1P14550 325 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 COPB2P35606 906 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 IRX5P78411 483 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-208ENST00000437607 SMAD3P84022 425 aaKnown RBP14.26□□□□□ -0.13
PTPRF-208ENST00000437607 KLRC3Q07444 240 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 NECTIN1Q15223 517 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 SNRNP48Q6IEG0 339 aaKnown RBP14.26□□□□□ -0.13
PTPRF-208ENST00000437607 CCSAPQ6IQ19 270 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-208ENST00000437607 KLHDC9Q8NEP7 349 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 FGD4Q96M96 766 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 SLF1Q9BQI6 1058 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 NYAP2Q9P242 653 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 TACC3Q9Y6A5 838 aa14.26□□□□□ -0.13
PTPRF-208ENST00000437607 TRANK1O15050 2925 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 SYNGAP1Q96PV0 1343 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 MYADML2A6NDP7 307 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 ZNF213O14771 459 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 ADCY6O43306 1168 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 PQBP1O60828 265 aaKnown RBP14.25□□□□□ -0.13
PTPRF-208ENST00000437607 ACLYP53396 1101 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 HAND2P61296 217 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 FAAP100Q0VG06 881 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 RABEP1Q15276 862 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 MAMDC4Q6UXC1 1216 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 MYLIPQ8WY64 445 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 TEX13BQ9BXU2 312 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 RBM19Q9Y4C8 960 aaKnown RBP14.25□□□□□ -0.13
PTPRF-208ENST00000437607 SNX14Q9Y5W7 946 aa14.25□□□□□ -0.13
PTPRF-208ENST00000437607 MINDY4BA8MYZ0 360 aa14.24□□□□□ -0.13
PTPRF-208ENST00000437607 ATP2A1O14983 1001 aa14.24□□□□□ -0.13
PTPRF-208ENST00000437607 CYP21A2P08686 494 aa14.24□□□□□ -0.13
PTPRF-208ENST00000437607 PSMA5P28066 241 aa14.24□□□□□ -0.13
PTPRF-208ENST00000437607 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTPRF-208ENST00000437607 ANKRD33Q7Z3H0 272 aa14.24□□□□□ -0.13
PTPRF-208ENST00000437607 MSL3Q8N5Y2 521 aaKnown RBP14.24□□□□□ -0.13
PTPRF-208ENST00000437607 PRPF38AQ8NAV1 312 aaKnown RBP14.24□□□□□ -0.13
PTPRF-208ENST00000437607 KCNB2Q92953 911 aa14.24□□□□□ -0.13
PTPRF-208ENST00000437607 JAKMIP1Q96N16 626 aaKnown RBP14.24□□□□□ -0.13
PTPRF-208ENST00000437607 TSEN34Q9BSV6 310 aaKnown RBP14.24□□□□□ -0.13
PTPRF-208ENST00000437607 MKNK2Q9HBH9 465 aa14.24□□□□□ -0.13
PTPRF-208ENST00000437607 CNPY2Q9Y2B0 182 aa14.24□□□□□ -0.13
PTPRF-208ENST00000437607 TTC28Q96AY4 2481 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 PRDM1O75626 825 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 SLC3A2P08195 630 aaKnown RBP14.23□□□□□ -0.13
PTPRF-208ENST00000437607 PPARAQ07869 468 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 KCNA10Q16322 511 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 RALYLQ86SE5 291 aaKnown RBP14.23□□□□□ -0.13
PTPRF-208ENST00000437607 RASEFQ8IZ41 740 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 CPXCR1Q8N123 301 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 MAFAQ8NHW3 353 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-208ENST00000437607 MKL1Q969V6 931 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 TOX2Q96NM4 488 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 RNF41Q9H4P4 317 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-208ENST00000437607 SLC38A10Q9HBR0 1119 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 RAVER2Q9HCJ3 691 aaKnown RBP14.23□□□□□ -0.13
PTPRF-208ENST00000437607 STARD7Q9NQZ5 370 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 TMEM39AQ9NV64 488 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 CLIP2Q9UDT6 1046 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 FAM184BQ9ULE4 1060 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms