RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 HMGCRP04035 888 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 PGK2P07205 417 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 CCL5P13501 91 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 TSGA10IPQ3SY00 556 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 CATIPQ7Z7H3 387 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 STAG2Q8N3U4 1231 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 NUP133Q8WUM0 1156 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 TMEM87BQ96K49 555 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 TCEANC2Q96MN5 208 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 UNC93B1Q9H1C4 597 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 RANBP17Q9H2T7 1088 aaKnown RBP21.79■■□□□ 1.08
SHH-203ENST00000435425 LY9Q9HBG7 655 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 CCPG1Q9ULG6 757 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 SNX14Q9Y5W7 946 aa21.79■■□□□ 1.08
SHH-203ENST00000435425 MYH6P13533 1939 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 POTEFA5A3E0 1075 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 CCDC69A6NI79 296 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 SH2B2O14492 632 aaPredicted RBP21.78■■□□□ 1.08
SHH-203ENST00000435425 ABRAQ8N0Z2 381 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 DDX11Q96FC9 970 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 JAKMIP1Q96N16 626 aaKnown RBP21.78■■□□□ 1.08
SHH-203ENST00000435425 TRERF1Q96PN7 1200 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 RNF208Q9H0X6 261 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 RNF146Q9NTX7 359 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 FLRT1Q9NZU1 646 aa21.78■■□□□ 1.08
SHH-203ENST00000435425 CPA1P15085 419 aa21.77■■□□□ 1.08
SHH-203ENST00000435425 TRMT44Q8IYL2 757 aaKnown RBP21.77■■□□□ 1.08
SHH-203ENST00000435425 ADGRF4Q8IZF3 695 aa21.77■■□□□ 1.08
SHH-203ENST00000435425 ANKRD35Q8N283 1001 aa21.77■■□□□ 1.08
SHH-203ENST00000435425 CHST13Q8NET6 341 aa21.77■■□□□ 1.08
SHH-203ENST00000435425 MYL10Q9BUA6 226 aa21.77■■□□□ 1.08
SHH-203ENST00000435425 USP26Q9BXU7 913 aa21.77■■□□□ 1.08
SHH-203ENST00000435425 SLC5A4Q9NY91 659 aa21.77■■□□□ 1.08
SHH-203ENST00000435425 MAD2L2Q9UI95 211 aa21.77■■□□□ 1.08
SHH-203ENST00000435425 HTTP42858 3142 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 KLRF2D3W0D1 207 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 ICAM1P05362 532 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 HOXC6P09630 235 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 GRM4Q14833 912 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 DHX32Q7L7V1 743 aaKnown RBP21.76■■□□□ 1.07
SHH-203ENST00000435425 RAB11FIP4Q86YS3 637 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 ZNF654Q8IZM8 581 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 KCNB2Q92953 911 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 MTA3Q9BTC8 594 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 ACAD9Q9H845 621 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 FBXO40Q9UH90 709 aa21.76■■□□□ 1.07
SHH-203ENST00000435425 PRKAR2AP13861 404 aaKnown RBP21.75■■□□□ 1.07
SHH-203ENST00000435425 EXOSC10Q01780 885 aaKnown RBP21.75■■□□□ 1.07
SHH-203ENST00000435425 TKFCQ3LXA3 575 aa21.75■■□□□ 1.07
SHH-203ENST00000435425 MUM1L1Q5H9M0 696 aa21.75■■□□□ 1.07
SHH-203ENST00000435425 MFSD14CQ5VZR4 134 aa21.75■■□□□ 1.07
SHH-203ENST00000435425 TMTC2Q8N394 836 aa21.75■■□□□ 1.07
SHH-203ENST00000435425 RBBP6Q7Z6E9 1792 aaKnown RBP21.74■■□□□ 1.07
SHH-203ENST00000435425 PALM3A6NDB9 673 aaPredicted RBP21.74■■□□□ 1.07
SHH-203ENST00000435425 EN2P19622 333 aaPredicted RBP21.74■■□□□ 1.07
SHH-203ENST00000435425 RXRAP19793 462 aa21.74■■□□□ 1.07
SHH-203ENST00000435425 CYP2C19P33261 490 aa21.74■■□□□ 1.07
SHH-203ENST00000435425 CACNB2Q08289 660 aaPredicted RBP21.74■■□□□ 1.07
SHH-203ENST00000435425 TROAPQ12815 778 aa21.74■■□□□ 1.07
SHH-203ENST00000435425 CDC37Q16543 378 aaPredicted RBP21.74■■□□□ 1.07
SHH-203ENST00000435425 USH1GQ495M9 461 aa21.74■■□□□ 1.07
SHH-203ENST00000435425 HMX1Q9NP08 348 aaPredicted RBP21.74■■□□□ 1.07
SHH-203ENST00000435425 HMGB1P09429 215 aaKnown RBP21.73■■□□□ 1.07
SHH-203ENST00000435425 LIFRP42702 1097 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 FGD1P98174 961 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 ZNF792Q3KQV3 632 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 BLOC1S2Q6QNY1 142 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 CCDC144CPQ8IYA2 1237 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 MAML3Q96JK9 1138 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 JMJD4Q9H9V9 463 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 SLC12A7Q9Y666 1083 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 RPTORQ8N122 1335 aa21.73■■□□□ 1.07
SHH-203ENST00000435425 EPB41L2O43491 1005 aaKnown RBP21.72■■□□□ 1.07
SHH-203ENST00000435425 DDAH1O94760 285 aa21.72■■□□□ 1.07
SHH-203ENST00000435425 QRICH1Q2TAL8 776 aa21.72■■□□□ 1.07
SHH-203ENST00000435425 NSMFQ6X4W1 530 aa21.72■■□□□ 1.07
SHH-203ENST00000435425 CTCFLQ8NI51 663 aaPredicted RBP21.72■■□□□ 1.07
SHH-203ENST00000435425 DEFB118Q96PH6 123 aa21.72■■□□□ 1.07
SHH-203ENST00000435425 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.72■■□□□ 1.076e-7■■■■□ 21.6
SHH-203ENST00000435425 WDR19Q8NEZ3 1342 aa21.72■■□□□ 1.07
SHH-203ENST00000435425 BAZ2BQ9UIF8 2168 aaKnown RBP21.71■■□□□ 1.07
SHH-203ENST00000435425 CASTP20810 708 aaKnown RBP21.71■■□□□ 1.07
SHH-203ENST00000435425 PSMA5P28066 241 aa21.71■■□□□ 1.07
SHH-203ENST00000435425 CNGA1P29973 690 aa21.71■■□□□ 1.07
SHH-203ENST00000435425 CCND3P30281 292 aaPredicted RBP21.71■■□□□ 1.07
SHH-203ENST00000435425 OLFML2BQ68BL8 750 aa21.71■■□□□ 1.07
SHH-203ENST00000435425 SYNE3Q6ZMZ3 975 aa21.71■■□□□ 1.07
SHH-203ENST00000435425 HOMER1Q86YM7 354 aa21.71■■□□□ 1.07
SHH-203ENST00000435425 PIBF1Q8WXW3 757 aa21.71■■□□□ 1.07
SHH-203ENST00000435425 A1CFQ9NQ94 594 aaKnown RBP21.71■■□□□ 1.07
SHH-203ENST00000435425 NAP1L2Q9ULW6 460 aaPredicted RBP21.71■■□□□ 1.07
SHH-203ENST00000435425 GJB1P08034 283 aa21.7■■□□□ 1.06
SHH-203ENST00000435425 KIF5BP33176 963 aa21.7■■□□□ 1.06
SHH-203ENST00000435425 PRAMEF19Q5SWL8 479 aa21.7■■□□□ 1.06
SHH-203ENST00000435425 MAP3K21Q5TCX8 1036 aa21.7■■□□□ 1.06
SHH-203ENST00000435425 Q6ZUG5 572 aa21.7■■□□□ 1.06
SHH-203ENST00000435425 FBXO11Q86XK2 927 aa21.7■■□□□ 1.06
SHH-203ENST00000435425 PNMA2Q9UL42 364 aa21.7■■□□□ 1.06
SHH-203ENST00000435425 DIS3Q9Y2L1 958 aaKnown RBP21.7■■□□□ 1.06
SHH-203ENST00000435425 DNAJC25-GNG10A0A024R161 153 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms