RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SYNPO2Q9UMS6 1093 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 TACC3Q9Y6A5 838 aa17.21■□□□□ 0.35
SDC1-204ENST00000429035 POTEB2H3BUK9 544 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 RANBP6O60518 1105 aaKnown RBP17.2■□□□□ 0.34
SDC1-204ENST00000429035 MCCP23508 829 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 OAZ1P54368 228 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 SNAP25P60880 206 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 IRX5P78411 483 aaPredicted RBP17.2■□□□□ 0.34
SDC1-204ENST00000429035 KCNA10Q16322 511 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 C1orf53Q5VUE5 145 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 KCTD1Q719H9 257 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 NUP133Q8WUM0 1156 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 VTI1AQ96AJ9 217 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 RNPC3Q96LT9 517 aaKnown RBP17.2■□□□□ 0.34
SDC1-204ENST00000429035 GUCD1Q96NT3 240 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 INCENPQ9NQS7 918 aa17.2■□□□□ 0.34
SDC1-204ENST00000429035 MOXD2PA6NHM9 499 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 NMT2O60551 498 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 ALAS1P13196 640 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 ITGB8P26012 769 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 CNTN2Q02246 1040 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 RRP12Q5JTH9 1297 aaKnown RBP17.19■□□□□ 0.34
SDC1-204ENST00000429035 PPP4R3BQ5MIZ7 849 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 VPS53Q5VIR6 699 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 MAMDC4Q6UXC1 1216 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 NOL8Q76FK4 1167 aaKnown RBP17.19■□□□□ 0.34
SDC1-204ENST00000429035 ZNF467Q7Z7K2 595 aaPredicted RBP17.19■□□□□ 0.34
SDC1-204ENST00000429035 CHURC1Q8WUH1 139 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 FGD4Q96M96 766 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 AGBL1Q96MI9 1066 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 GLT1D1Q96MS3 346 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 TSEN34Q9BSV6 310 aaKnown RBP17.19■□□□□ 0.34
SDC1-204ENST00000429035 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.19■□□□□ 0.34
SDC1-204ENST00000429035 LCTP09848 1927 aa17.19■□□□□ 0.34
SDC1-204ENST00000429035 DCDC2CA8MYV0 355 aa17.18■□□□□ 0.34
SDC1-204ENST00000429035 ADCY6O43306 1168 aa17.18■□□□□ 0.34
SDC1-204ENST00000429035 DUSP11O75319 330 aaKnown RBP17.18■□□□□ 0.34
SDC1-204ENST00000429035 CCDC144BQ3MJ40 725 aa17.18■□□□□ 0.34
SDC1-204ENST00000429035 CCDC144CPQ8IYA2 1237 aa17.18■□□□□ 0.34
SDC1-204ENST00000429035 STAG1Q8WVM7 1258 aa17.18■□□□□ 0.34
SDC1-204ENST00000429035 GMCL1Q96IK5 515 aa17.18■□□□□ 0.34
SDC1-204ENST00000429035 ABHD16BQ9H3Z7 469 aa17.18■□□□□ 0.34
SDC1-204ENST00000429035 SALL3Q9BXA9 1300 aa17.18■□□□□ 0.34
SDC1-204ENST00000429035 FOXP2O15409 715 aa17.17■□□□□ 0.34
SDC1-204ENST00000429035 FDX1P10109 184 aa17.17■□□□□ 0.34
SDC1-204ENST00000429035 FPGSQ05932 587 aa17.17■□□□□ 0.34
SDC1-204ENST00000429035 FAM109BQ6ICB4 259 aaPredicted RBP17.17■□□□□ 0.34
SDC1-204ENST00000429035 KLHDC9Q8NEP7 349 aa17.17■□□□□ 0.34
SDC1-204ENST00000429035 EVI5LQ96CN4 794 aa17.17■□□□□ 0.34
SDC1-204ENST00000429035 TRERF1Q96PN7 1200 aa17.17■□□□□ 0.34
SDC1-204ENST00000429035 A1CFQ9NQ94 594 aaKnown RBP17.17■□□□□ 0.34
SDC1-204ENST00000429035 TRIM6-TRIM34B2RNG4 842 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 KIAA0355O15063 1070 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 ASGR1P07306 291 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 NSMFQ6X4W1 530 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.16■□□□□ 0.34
SDC1-204ENST00000429035 PCSK9Q8NBP7 692 aaKnown RBP17.16■□□□□ 0.34
SDC1-204ENST00000429035 FAM227BQ96M60 508 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 CCPG1Q9ULG6 757 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 PRR12Q9ULL5 1215 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 ZNF536O15090 1300 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 MROH7Q68CQ1 1323 aa17.16■□□□□ 0.34
SDC1-204ENST00000429035 A0A0D9SFI3 127 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 A0A0U1RQG5 324 aaPredicted RBP17.15■□□□□ 0.34
SDC1-204ENST00000429035 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.15■□□□□ 0.34
SDC1-204ENST00000429035 CST5P28325 142 aaPredicted RBP17.15■□□□□ 0.34
SDC1-204ENST00000429035 PDE1AP54750 535 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 EPHB4P54760 987 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 BEX3Q00994 111 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 FAAP100Q0VG06 881 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 TKFCQ3LXA3 575 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 GNASQ5JWF2 1037 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 EEPD1Q7L9B9 569 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 IL17RBQ9NRM6 502 aa17.15■□□□□ 0.34
SDC1-204ENST00000429035 DDX49Q9Y6V7 483 aaKnown RBP17.15■□□□□ 0.34
SDC1-204ENST00000429035 FRMPD2Q68DX3 1309 aaPredicted RBP17.15■□□□□ 0.34
SDC1-204ENST00000429035 LAMA2P24043 3122 aaKnown RBP17.14■□□□□ 0.34
SDC1-204ENST00000429035 SOWAHBA6NEL2 793 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 ASB14A6NK59 587 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 GJA9P57773 515 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 HAND2P61296 217 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 SMAD3P84022 425 aaKnown RBP17.14■□□□□ 0.33
SDC1-204ENST00000429035 TNFAIP2Q03169 654 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 MUM1L1Q5H9M0 696 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 CCSAPQ6IQ19 270 aaPredicted RBP17.14■□□□□ 0.33
SDC1-204ENST00000429035 RCSD1Q6JBY9 416 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 ANKRD33Q7Z3H0 272 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 TLK2Q86UE8 772 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 FBXO16Q8IX29 292 aaPredicted RBP17.14■□□□□ 0.33
SDC1-204ENST00000429035 FAM133AQ8N9E0 248 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 RILPL2Q969X0 211 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
SDC1-204ENST00000429035 PPP1R12CQ9BZL4 782 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 LNPKQ9C0E8 428 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 UPF3AQ9H1J1 476 aaKnown RBP17.14■□□□□ 0.33
SDC1-204ENST00000429035 HELLSQ9NRZ9 838 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 LAMA4Q16363 1823 aa17.14■□□□□ 0.33
SDC1-204ENST00000429035 TLR3O15455 904 aaKnown RBP17.13■□□□□ 0.33
SDC1-204ENST00000429035 PTGS1P23219 599 aa17.13■□□□□ 0.33
SDC1-204ENST00000429035 SLC16A2P36021 539 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms