RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 IL1R1P14778 569 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 CDC25AP30304 524 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 PRCPP42785 496 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 KCNJ12Q14500 433 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 DGKHQ86XP1 1220 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 NLGN1Q8N2Q7 840 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 ANKS1AQ92625 1134 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 PCDHA4Q9UN74 947 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 ABL1P00519 1130 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 ZNF569Q5MCW4 686 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 IRF2BP1Q8IU81 584 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 TGFBRAP1Q8WUH2 860 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 DYNLL2Q96FJ2 89 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 GDAQ9Y2T3 454 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 PPEF1O14829 653 aaPredicted RBP16.09■□□□□ 0.17
LIG1-202ENST00000427526 RIMBP2O15034 1052 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 CHMP4BP1P59074 171 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 TUBB2AQ13885 445 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 NAALADL2Q58DX5 795 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 MSL1Q68DK7 614 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 TYW1BQ6NUM6 668 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 TEX2Q8IWB9 1127 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 ACRBPQ8NEB7 543 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 TUBB2BQ9BVA1 445 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 FUT8Q9BYC5 575 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 ARFGAP3Q9NP61 516 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 TAB2Q9NYJ8 693 aa16.09■□□□□ 0.17
LIG1-202ENST00000427526 TRIM14Q14142 442 aa16.08■□□□□ 0.17
LIG1-202ENST00000427526 JAKMIP3Q5VZ66 844 aa16.08■□□□□ 0.17
LIG1-202ENST00000427526 STAG2Q8N3U4 1231 aa16.08■□□□□ 0.17
LIG1-202ENST00000427526 KAT14Q9H8E8 782 aa16.08■□□□□ 0.17
LIG1-202ENST00000427526 DISC1Q9NRI5 854 aa16.08■□□□□ 0.17
LIG1-202ENST00000427526 H7C1D1 291 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 MMP10P09238 476 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 ARHGAP25P42331 645 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 GSTO1P78417 241 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 TFAP4Q01664 338 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 MFSD14BQ5SR56 506 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 C12orf60Q5U649 245 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 CYP26C1Q6V0L0 522 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 ADSSL1Q8N142 457 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 GPKOWQ92917 476 aaPredicted RBP eCLIP16.08■□□□□ 0.161e-9■■■■■ 32.6
LIG1-202ENST00000427526 MAST2Q6P0Q8 1798 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 CCDC151A5D8V7 595 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 BAG3O95817 575 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 SRGNP10124 158 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 BRD2P25440 801 aaKnown RBP16.08■□□□□ 0.16
LIG1-202ENST00000427526 CYP2C19P33261 490 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 SP8Q8IXZ3 490 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 CEP112Q8N8E3 955 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 PNMA1Q8ND90 353 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 RTFDC1Q9BY42 306 aaPredicted RBP16.08■□□□□ 0.16
LIG1-202ENST00000427526 ANKZF1Q9H8Y5 726 aa16.08■□□□□ 0.16
LIG1-202ENST00000427526 MYH8P13535 1937 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 STAT6P42226 847 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 NT5C2P49902 561 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 SLC35G1Q2M3R5 365 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 MAPKAPK5Q8IW41 473 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 NUP88Q99567 741 aaPredicted RBP16.07■□□□□ 0.16
LIG1-202ENST00000427526 MAD2L2Q9UI95 211 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 MAPK8IP1Q9UQF2 711 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 CCDC88AQ3V6T2 1871 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 CTAGE9A4FU28 777 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 CHRM1P11229 460 aaPredicted RBP16.07■□□□□ 0.16
LIG1-202ENST00000427526 PPP4CP60510 307 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 GRM4Q14833 912 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 WWC2Q6AWC2 1192 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 SLC35F6Q8N357 371 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 ANKRD20A12PQ8NF67 263 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 RASGRP4Q8TDF6 673 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 SAP30BPQ9UHR5 308 aaKnown RBP16.07■□□□□ 0.16
LIG1-202ENST00000427526 PCDHA6Q9UN73 950 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 PCDHA8Q9Y5H6 950 aa16.07■□□□□ 0.16
LIG1-202ENST00000427526 LDHCP07864 332 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 BTDP43251 543 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 KCNB1Q14721 858 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 BRD3Q15059 726 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 DHX37Q8IY37 1157 aaKnown RBP16.06■□□□□ 0.16
LIG1-202ENST00000427526 SECISBP2LQ93073 1101 aaKnown RBP16.06■□□□□ 0.16
LIG1-202ENST00000427526 ZSWIM4Q9H7M6 989 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 MYO1AQ9UBC5 1043 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 ATP6V0A2Q9Y487 856 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 KLRC4O43908 158 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 PARP1P09874 1014 aaKnown RBP16.06■□□□□ 0.16
LIG1-202ENST00000427526 KRT9P35527 623 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 DTHD1Q6ZMT9 781 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 DAGLBQ8NCG7 672 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 HNRNPLLQ8WVV9 542 aaKnown RBP16.06■□□□□ 0.16
LIG1-202ENST00000427526 TMEM60Q9H2L4 133 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 PUF60Q9UHX1 559 aaKnown RBP16.06■□□□□ 0.16
LIG1-202ENST00000427526 RAB21Q9UL25 225 aa16.06■□□□□ 0.16
LIG1-202ENST00000427526 CYTH3O43739 400 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 RXRBP28702 533 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 PMS1P54277 932 aaKnown RBP16.05■□□□□ 0.16
LIG1-202ENST00000427526 GTF2IP78347 998 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 UBXN1Q04323 297 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 TAF3Q5VWG9 929 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 SLC44A5Q8NCS7 719 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 KBTBD4Q9NVX7 518 aa16.05■□□□□ 0.16
LIG1-202ENST00000427526 TRIM49BA6NDI0 452 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms