RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 C12orf60Q5U649 245 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 TOGARAM2Q6ZUX3 1019 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 ZSCAN29Q8IWY8 852 aaPredicted RBP12.08□□□□□ -0.48
CUX1-205ENST00000425244 FAM163AQ96GL9 167 aaPredicted RBP12.08□□□□□ -0.48
CUX1-205ENST00000425244 FEZ1Q99689 392 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 TDRD3Q9H7E2 651 aaKnown RBP12.08□□□□□ -0.48
CUX1-205ENST00000425244 KAT14Q9H8E8 782 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 L2HGDHQ9H9P8 463 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 MKRN1Q9UHC7 482 aaKnown RBP12.08□□□□□ -0.48
CUX1-205ENST00000425244 SCAF8Q9UPN6 1271 aaKnown RBP12.08□□□□□ -0.48
CUX1-205ENST00000425244 SUGT1Q9Y2Z0 365 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.08□□□□□ -0.488e-7■■□□□ 12.7
CUX1-205ENST00000425244 VGLL3A8MV65 326 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 TEX33O43247 280 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 ERCC5P28715 1186 aaPredicted RBP12.07□□□□□ -0.48
CUX1-205ENST00000425244 TFAP4Q01664 338 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 TMEM139Q8IV31 216 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 TEX2Q8IWB9 1127 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 REXO1L1PQ8IX06 675 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 TC2NQ8N9U0 490 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 SPATA20Q8TB22 786 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 RASGRP4Q8TDF6 673 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 TNFRSF25Q93038 417 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 ZSCAN20P17040 1043 aaPredicted RBP12.07□□□□□ -0.48
CUX1-205ENST00000425244 CDC25AP30304 524 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 TBX2Q13207 712 aaPredicted RBP12.07□□□□□ -0.48
CUX1-205ENST00000425244 ZNRF3Q9ULT6 936 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 CTNND2Q9UQB3 1225 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 CLRN2A0PK11 232 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 ZBTB22O15209 634 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 GNG11P61952 73 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 ATP2C1P98194 919 aaPredicted RBP12.07□□□□□ -0.48
CUX1-205ENST00000425244 CXCL9Q07325 125 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 DPYDQ12882 1025 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 GRIPAP1Q4V328 841 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 RBM26Q5T8P6 1007 aaKnown RBP12.07□□□□□ -0.48
CUX1-205ENST00000425244 SPATA1Q5VX52 437 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 TRIM65Q6PJ69 517 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 ARHGAP27Q6ZUM4 889 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 ZFPM1Q8IX07 1006 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 OGFOD1Q8N543 542 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 MNS1Q8NEH6 495 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 PRMT6Q96LA8 375 aaPredicted RBP12.07□□□□□ -0.48
CUX1-205ENST00000425244 OGFRQ9NZT2 677 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 GJA3Q9Y6H8 435 aa12.07□□□□□ -0.48
CUX1-205ENST00000425244 PHLPP2Q6ZVD8 1323 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 FANCGO15287 622 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 IGSF3O75054 1194 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 CHRM1P11229 460 aaPredicted RBP12.06□□□□□ -0.48
CUX1-205ENST00000425244 KIF5BP33176 963 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 KARSQ15046 597 aaKnown RBP12.06□□□□□ -0.48
CUX1-205ENST00000425244 PFKFB3Q16875 520 aaPredicted RBP12.06□□□□□ -0.48
CUX1-205ENST00000425244 RSBN1LQ6PCB5 846 aaPredicted RBP12.06□□□□□ -0.48
CUX1-205ENST00000425244 TMED8Q6PL24 325 aaPredicted RBP12.06□□□□□ -0.48
CUX1-205ENST00000425244 HHIPL2Q6UWX4 724 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 IQUBQ8NA54 791 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 RASSF8Q8NHQ8 419 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 KIAA1551Q9HCM1 1747 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 SHTN1A0MZ66 631 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 FAM196BA6NMK8 535 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 CCT6AP40227 531 aaKnown RBP12.06□□□□□ -0.48
CUX1-205ENST00000425244 MTF1Q14872 753 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 NR1I3Q14994 352 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 SBK1Q52WX2 424 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 RCSD1Q6JBY9 416 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 SH3RF1Q7Z6J0 888 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 PPFIBP1Q86W92 1011 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 ZNF444Q8N0Y2 327 aaPredicted RBP12.06□□□□□ -0.48
CUX1-205ENST00000425244 STAG2Q8N3U4 1231 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 IGSF22Q8N9C0 903 aa12.06□□□□□ -0.48
CUX1-205ENST00000425244 A0A1B0GTH6 734 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 KIF20AO95235 890 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 TUBB4AP04350 444 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 TSPY3P0CV98 308 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 TSPY8P0CW00 308 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 CUL4BQ13620 913 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 IL17AQ16552 155 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 ARHGAP29Q52LW3 1261 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 RRAGBQ5VZM2 374 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 PNMA1Q8ND90 353 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 ZDHHC15Q96MV8 337 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 GSDMAQ96QA5 445 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 DDX41Q9UJV9 622 aaKnown RBP12.05□□□□□ -0.48
CUX1-205ENST00000425244 MAPK8IP1Q9UQF2 711 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 CDK5RAP2Q96SN8 1893 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 SOWAHDA6NJG2 315 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 AKR1B15C9JRZ8 316 aaPredicted RBP12.05□□□□□ -0.48
CUX1-205ENST00000425244 STX10O60499 249 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 FCHSD1Q86WN1 690 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 WDR24Q96S15 920 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 CARD6Q9BX69 1037 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 STX8Q9UNK0 236 aa12.05□□□□□ -0.48
CUX1-205ENST00000425244 PPP1R3GB7ZBB8 358 aa12.04□□□□□ -0.48
CUX1-205ENST00000425244 TCP10L2B9ZVM9 353 aa12.04□□□□□ -0.48
CUX1-205ENST00000425244 CASQ1P31415 396 aa12.04□□□□□ -0.48
CUX1-205ENST00000425244 PRELPP51888 382 aa12.04□□□□□ -0.48
CUX1-205ENST00000425244 RBL2Q08999 1139 aa12.04□□□□□ -0.48
CUX1-205ENST00000425244 HEATR3Q7Z4Q2 680 aa12.04□□□□□ -0.48
CUX1-205ENST00000425244 CERS3Q8IU89 383 aa12.04□□□□□ -0.48
CUX1-205ENST00000425244 BLIDQ8IZY5 108 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms