RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 NSUN4Q96CB9 384 aaKnown RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 PRPF3O43395 683 aaKnown RBP16.92■□□□□ 0.3
USP4-203ENST00000415188 BMP15O95972 392 aa16.92■□□□□ 0.3
USP4-203ENST00000415188 CAP1Q01518 475 aa16.92■□□□□ 0.3
USP4-203ENST00000415188 DPCR1Q3MIW9 517 aa16.92■□□□□ 0.3
USP4-203ENST00000415188 SBK1Q52WX2 424 aa16.92■□□□□ 0.3
USP4-203ENST00000415188 OTOP1Q7RTM1 612 aa16.92■□□□□ 0.3
USP4-203ENST00000415188 FAM13BQ9NYF5 915 aa16.92■□□□□ 0.3
USP4-203ENST00000415188 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.92■□□□□ 0.3
USP4-203ENST00000415188 TRIM17Q9Y577 477 aa16.92■□□□□ 0.3
USP4-203ENST00000415188 IRF6O14896 467 aa16.91■□□□□ 0.3
USP4-203ENST00000415188 PTPREP23469 700 aa16.91■□□□□ 0.3
USP4-203ENST00000415188 IFIT1BQ5T764 474 aaKnown RBP16.91■□□□□ 0.3
USP4-203ENST00000415188 ENAHQ8N8S7 591 aaPredicted RBP16.91■□□□□ 0.3
USP4-203ENST00000415188 ZNF384Q8TF68 577 aa16.91■□□□□ 0.3
USP4-203ENST00000415188 NUP133Q8WUM0 1156 aa16.91■□□□□ 0.3
USP4-203ENST00000415188 ZKSCAN3Q9BRR0 538 aa16.91■□□□□ 0.3
USP4-203ENST00000415188 ARPP21Q9UBL0 812 aaPredicted RBP16.91■□□□□ 0.3
USP4-203ENST00000415188 BTBD18B2RXH4 712 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 BTDP43251 543 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 DYNLL1P63167 89 aaKnown RBP16.9■□□□□ 0.3
USP4-203ENST00000415188 MECOMQ03112 1051 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 PPIL2Q13356 520 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 TAF1CQ15572 869 aaPredicted RBP16.9■□□□□ 0.3
USP4-203ENST00000415188 CTR9Q6PD62 1173 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 KRBA2Q6ZNG9 492 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 C17orf53Q8N3J3 647 aaPredicted RBP16.9■□□□□ 0.3
USP4-203ENST00000415188 OSBPL5Q9H0X9 879 aaPredicted RBP16.9■□□□□ 0.3
USP4-203ENST00000415188 NRBP1Q9UHY1 535 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 ZNF112Q9UJU3 913 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 KCNH3Q9ULD8 1083 aa16.9■□□□□ 0.3
USP4-203ENST00000415188 BTBD19C9JJ37 291 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 SLURP2P0DP57 97 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 CETPP11597 493 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 GUCY1A2P33402 732 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 SP3Q02447 781 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 KANK3Q6NY19 840 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 SH3BP5LQ7L8J4 393 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 LRRC8AQ8IWT6 810 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 CACTINQ8WUQ7 758 aaKnown RBP16.89■□□□□ 0.29
USP4-203ENST00000415188 FAM163AQ96GL9 167 aaPredicted RBP16.89■□□□□ 0.29
USP4-203ENST00000415188 ERO1AQ96HE7 468 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 IDI2Q9BXS1 227 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 DDX4Q9NQI0 724 aaKnown RBP16.89■□□□□ 0.29
USP4-203ENST00000415188 KCND1Q9NSA2 647 aa16.89■□□□□ 0.29
USP4-203ENST00000415188 FBXO2Q9UK22 296 aaPredicted RBP16.89■□□□□ 0.29
USP4-203ENST00000415188 HTTP42858 3142 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 TOB1P50616 345 aaPredicted RBP16.88■□□□□ 0.29
USP4-203ENST00000415188 FUT2Q10981 343 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 SNAPC2Q13487 334 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 PICALMQ13492 652 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 HSP90AA2PQ14568 343 aaPredicted RBP16.88■□□□□ 0.29
USP4-203ENST00000415188 CCDC144BQ3MJ40 725 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 STK11IPQ8N1F8 1099 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 CCDC150Q8NCX0 1101 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 CCDC34Q96HJ3 373 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 ZFYVE28Q9HCC9 887 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 BRMS1Q9HCU9 246 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 SRPRBQ9Y5M8 271 aaKnown RBP16.88■□□□□ 0.29
USP4-203ENST00000415188 ATRNL1Q5VV63 1379 aa16.88■□□□□ 0.29
USP4-203ENST00000415188 CBFA2T2O43439 604 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 ENTPD3O75355 529 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 KRT2P35908 639 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 PPATQ06203 517 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 PDE4BQ07343 736 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 NCAPHQ15003 741 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 CCDC178Q5BJE1 867 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 TMTC3Q6ZXV5 915 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 CERS3Q8IU89 383 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 ZSCAN29Q8IWY8 852 aaPredicted RBP16.87■□□□□ 0.29
USP4-203ENST00000415188 SLF2Q8IX21 1173 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 CNNM3Q8NE01 707 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 PHF20Q9BVI0 1012 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 DCP1AQ9NPI6 582 aaPredicted RBP16.87■□□□□ 0.29
USP4-203ENST00000415188 KCNJ14Q9UNX9 436 aa16.87■□□□□ 0.29
USP4-203ENST00000415188 GPR75-ASB3A0A0A6YYF3 556 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 DDTLA6NHG4 134 aaPredicted RBP16.86■□□□□ 0.29
USP4-203ENST00000415188 USP17L12C9JPN9 530 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 USP17L21D6R901 530 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 RHBDL3P58872 404 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 GSTO1P78417 241 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 MYL5Q02045 173 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 TROAPQ12815 778 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 LRMPQ12912 555 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 TRIML1Q8N9V2 468 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 ERCC4Q92889 916 aaPredicted RBP16.86■□□□□ 0.29
USP4-203ENST00000415188 PDCL3Q9H2J4 239 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 EFCC1Q9HA90 598 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 DACH1Q9UI36 760 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 NAV1Q8NEY1 1877 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 ROBO3Q96MS0 1386 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 TRIM75PA6NK02 468 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 TNRC18O15417 2968 aaPredicted RBP16.86■□□□□ 0.29
USP4-203ENST00000415188 NRDCO43847 1150 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 KCNJ6P48051 423 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 PKN1Q16512 942 aa16.86■□□□□ 0.29
USP4-203ENST00000415188 CT47A1Q5JQC4 288 aaPredicted RBP16.86■□□□□ 0.29
USP4-203ENST00000415188 NOL9Q5SY16 702 aaKnown RBP16.86■□□□□ 0.29
USP4-203ENST00000415188 METTL16Q86W50 562 aaKnown RBP16.86■□□□□ 0.29
USP4-203ENST00000415188 CTCFLQ8NI51 663 aaPredicted RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms