RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 RASGRP4Q8TDF6 673 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 CCND2P30279 289 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 NFE2L3Q9Y4A8 694 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 PALLDQ8WX93 1383 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 ZSCAN20P17040 1043 aaPredicted RBP12.51□□□□□ -0.41
TTC28-201ENST00000397906 RSPH3Q86UC2 560 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 TTC30AQ86WT1 665 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 SLF1Q9BQI6 1058 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 ADCY9O60503 1353 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 INSRP06213 1382 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 CACNB3P54284 484 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 MYOCDQ8IZQ8 938 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 SEMA3EO15041 775 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 XRCC6P12956 609 aaKnown RBP eCLIP12.5□□□□□ -0.416e-7■■■■■ 28.8
TTC28-201ENST00000397906 MIS18BP1Q6P0N0 1132 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 MLKLQ8NB16 471 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.5□□□□□ -0.41
TTC28-201ENST00000397906 MTX1Q13505 466 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 CIAPIN1Q6FI81 312 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 VPS37BQ9H9H4 285 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 HESX1Q9UBX0 185 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 WDR17Q8IZU2 1322 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 STK25O00506 426 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 PI4K2BQ8TCG2 481 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 USP17L3A6NCW0 530 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 USP17L4A6NCW7 530 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 USP17L1Q7RTZ2 530 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 GJA10Q969M2 543 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 AFF2P51816 1311 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 INO80B-WBP1J3KQ70 363 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 IFNB1P01574 187 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 SAT1P21673 171 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 LACTBP83111 547 aaPredicted RBP12.5□□□□□ -0.41
TTC28-201ENST00000397906 NUP58Q9BVL2 599 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 INO80BQ9C086 356 aaPredicted RBP12.5□□□□□ -0.41
TTC28-201ENST00000397906 ATP10DQ9P241 1426 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 KIAA1024Q9UPX6 916 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.5□□□□□ -0.41
TTC28-201ENST00000397906 SLC4A1P02730 911 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 PDE6CP51160 858 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 SLC12A2P55011 1212 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 OR52Z1P0C646 297 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 ZNF827Q17R98 1081 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 KAZNQ674X7 775 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 DYNLL2Q96FJ2 89 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 PLEKHG1Q9ULL1 1385 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 MYL3P08590 195 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 PI16Q6UXB8 463 aa12.5□□□□□ -0.41
TTC28-201ENST00000397906 RYBPQ8N488 228 aaPredicted RBP12.5□□□□□ -0.41
TTC28-201ENST00000397906 MAGED2Q9UNF1 606 aaPredicted RBP12.5□□□□□ -0.41
TTC28-201ENST00000397906 CAPN12Q6ZSI9 719 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 KRT222Q8N1A0 295 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 TFDP1Q14186 410 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 CC2D2BQ6DHV5 1058 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 KRT26Q7Z3Y9 468 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 ZBTB33Q86T24 672 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 PLCB4Q15147 1175 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 ATP5DP30049 168 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 CACNB1Q02641 598 aaPredicted RBP12.49□□□□□ -0.41
TTC28-201ENST00000397906 ODR4Q5SWX8 454 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 IWS1Q96ST2 819 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 PSMD6Q15008 389 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 PIM2Q9P1W9 311 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 ADD3Q9UEY8 706 aaKnown RBP12.49□□□□□ -0.41
TTC28-201ENST00000397906 FAM135BQ49AJ0 1406 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 RETREG2Q8NC44 543 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 AMNQ9BXJ7 453 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 IFIH1Q9BYX4 1025 aaKnown RBP12.49□□□□□ -0.41
TTC28-201ENST00000397906 SWAP70Q9UH65 585 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 KCNJ18B7U540 433 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 ADKP55263 362 aaKnown RBP12.49□□□□□ -0.41
TTC28-201ENST00000397906 KCNJ12Q14500 433 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 FAM184BQ9ULE4 1060 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 CALCOCO1Q9P1Z2 691 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 BUB1O43683 1085 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 FYB2Q5VWT5 728 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 POLIQ9UNA4 740 aa12.49□□□□□ -0.41
TTC28-201ENST00000397906 PSDA5PKW4 1024 aaPredicted RBP12.48□□□□□ -0.41
TTC28-201ENST00000397906 DDAH1O94760 285 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 ZBED2Q9BTP6 218 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.48□□□□□ -0.419e-7■■■■□ 22.5
TTC28-201ENST00000397906 ROBO2Q9HCK4 1378 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 INTS8Q75QN2 995 aaKnown RBP12.48□□□□□ -0.41
TTC28-201ENST00000397906 C2orf69Q8N8R5 385 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 PIGBQ92521 554 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 ZNF341Q9BYN7 854 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 CBX8Q9HC52 389 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 MKRN1Q9UHC7 482 aaKnown RBP12.48□□□□□ -0.41
TTC28-201ENST00000397906 CYP2D7A0A087X1C5 515 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 STAT1P42224 750 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 RABEP2Q9H5N1 569 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 PRKAB2O43741 272 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 AOC3Q16853 763 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 LONRF2Q1L5Z9 754 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 LCORLQ8N3X6 602 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 MEIS1O00470 390 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 USP17L8P0C7I0 530 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 NPR1P16066 1061 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 RAB20Q9NX57 234 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 BTBD18B2RXH4 712 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms