RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 ARHGAP44Q17R89 818 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 RBM26Q5T8P6 1007 aaKnown RBP11.93□□□□□ -0.5
CCDC40-204ENST00000397545 STOX1Q6ZVD7 989 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 KRT25Q7Z3Z0 450 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 PEX26Q7Z412 305 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 PNMA1Q8ND90 353 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 EPC1Q9H2F5 836 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 ATG3Q9NT62 314 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 FRMD4BQ9Y2L6 1034 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 DCCP43146 1447 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 COL15A1P39059 1388 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 PPP1R2P41236 205 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 COPB1P53618 953 aaKnown RBP11.92□□□□□ -0.5
CCDC40-204ENST00000397545 MRPS25P82663 173 aaKnown RBP11.92□□□□□ -0.5
CCDC40-204ENST00000397545 TCP10Q12799 353 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 USH1GQ495M9 461 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 SRGAP1Q7Z6B7 1085 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.92□□□□□ -0.5
CCDC40-204ENST00000397545 PARD6BQ9BYG5 372 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 CTTNBP2NLQ9P2B4 639 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 MYCNP04198 464 aaPredicted RBP11.92□□□□□ -0.5
CCDC40-204ENST00000397545 KRT5P13647 590 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 CASP1P29466 404 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 SCARF1Q14162 830 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 SFMBT2Q5VUG0 894 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 ZBTB38Q8NAP3 1195 aaPredicted RBP11.92□□□□□ -0.5
CCDC40-204ENST00000397545 PPM1EQ8WY54 764 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 CCDC51Q96ER9 411 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 IL17RAQ96F46 866 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 HAUS4Q9H6D7 363 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 MROH5Q6ZUA9 1318 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 DDX39AO00148 427 aaKnown RBP11.92□□□□□ -0.5
CCDC40-204ENST00000397545 DNM2P50570 870 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 CEP85LQ5SZL2 805 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 ZSWIM5Q9P217 1185 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 FAN1Q9Y2M0 1017 aa11.92□□□□□ -0.5
CCDC40-204ENST00000397545 KCNK3O14649 394 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 RPN1P04843 607 aaKnown RBP11.91□□□□□ -0.5
CCDC40-204ENST00000397545 SCG2P13521 617 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 UAP1Q16222 522 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-204ENST00000397545 USP37Q86T82 979 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 OGFOD1Q8N543 542 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 TMEM87AQ8NBN3 555 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 EPSTI1Q96J88 318 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 STMN4Q9H169 189 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-204ENST00000397545 CXCR5P32302 372 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 SLC1A4P43007 532 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 BIRC3Q13489 604 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 NAA35Q5VZE5 725 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 TRIML1Q8N9V2 468 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 KCNB2Q92953 911 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 LRRC45Q96CN5 670 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 ZCCHC17Q9NP64 241 aaKnown RBP11.91□□□□□ -0.5
CCDC40-204ENST00000397545 MAN1B1Q9UKM7 699 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 PCDHB6Q9Y5E3 794 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 C5P01031 1676 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 CYP2D7A0A087X1C5 515 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 B4DLN1 442 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 H7C1D1 291 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 ATP2A1O14983 1001 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 ADCY7P51828 1080 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 RPS8P62241 208 aaKnown RBP11.91□□□□□ -0.5
CCDC40-204ENST00000397545 SEL1L2Q5TEA6 688 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 CCDC63Q8NA47 563 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 FAM204AQ9H8W3 233 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 CCDC87Q9NVE4 849 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 UTP11Q9Y3A2 253 aaKnown RBP11.91□□□□□ -0.5
CCDC40-204ENST00000397545 COL5A2P05997 1499 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-204ENST00000397545 CCDC169A6NNP5 214 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 GCNT3O95395 438 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 RXRBP28702 533 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 CDC25BP30305 580 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 CCT5P48643 541 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 CYP27A1Q02318 531 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 VWA3BQ502W6 1294 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 C6orf163Q5TEZ5 329 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 MGARPQ8TDB4 240 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 LSM14BQ9BX40 385 aaKnown RBP11.91□□□□□ -0.5
CCDC40-204ENST00000397545 IMPG2Q9BZV3 1241 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 ASIC3Q9UHC3 531 aa11.91□□□□□ -0.5
CCDC40-204ENST00000397545 KLRF2D3W0D1 207 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 IKBKBO14920 756 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 GTPBP6O43824 516 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 PCCAP05165 728 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 TTLL12Q14166 644 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 CNBD1Q8NA66 436 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 ISCA1Q9BUE6 129 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 DPH5Q9H2P9 285 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 TMEM232C9JQI7 657 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 BACH1O14867 736 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 ACTN4O43707 911 aaKnown RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 ECM2O94769 699 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 GRM1Q13255 1194 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 UBE3CQ15386 1083 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 TRIM58Q8NG06 486 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 GOLPH3LQ9H4A5 285 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 SEC31BQ9NQW1 1179 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 NKIRAS1Q9NYS0 192 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 MYO1AQ9UBC5 1043 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 MKRN1Q9UHC7 482 aaKnown RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms