RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 TMEM60Q9H2L4 133 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 ATRNL1Q5VV63 1379 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 C21orf2O43822 256 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 TPM2P07951 284 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 ERCC5P28715 1186 aaPredicted RBP16.95■□□□□ 0.3
CBX3-202ENST00000396386 FANCLQ9NW38 375 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 GTPBP6O43824 516 aaPredicted RBP16.94■□□□□ 0.3
CBX3-202ENST00000396386 OR52Z1P0C646 297 aa16.94■□□□□ 0.3
CBX3-202ENST00000396386 STAT6P42226 847 aa16.94■□□□□ 0.3
CBX3-202ENST00000396386 BAG6P46379 1132 aa16.94■□□□□ 0.3
CBX3-202ENST00000396386 FMR1Q06787 632 aaKnown RBP eCLIP16.94■□□□□ 0.3
CBX3-202ENST00000396386 SYNRGQ9UMZ2 1314 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 PNMA6FA0A0J9YX94 578 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 YDJCA8MPS7 323 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 ENTPD3O75355 529 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 UBASH3AP57075 661 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 ARID5BQ14865 1188 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 LETM2Q2VYF4 491 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 CFAP100Q494V2 611 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 CERKLQ49MI3 558 aaPredicted RBP16.93■□□□□ 0.3
CBX3-202ENST00000396386 SH3BP5LQ7L8J4 393 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 ADGRF4Q8IZF3 695 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 TTLL6Q8N841 843 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 JMJD4Q9H9V9 463 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 DISC1Q9NRI5 854 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 NYAP2Q9P242 653 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 NFE2L3Q9Y4A8 694 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 FAM196BA6NMK8 535 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 CCNT1O60563 726 aaKnown RBP16.93■□□□□ 0.3
CBX3-202ENST00000396386 CASP1P29466 404 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 TRMT44Q8IYL2 757 aaKnown RBP16.93■□□□□ 0.3
CBX3-202ENST00000396386 RTKN2Q8IZC4 609 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 RASSF8Q8NHQ8 419 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 TBCKQ8TEA7 893 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 DCAF4Q8WV16 495 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 COA7Q96BR5 231 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 KANSL2Q9H9L4 492 aa16.93■□□□□ 0.3
CBX3-202ENST00000396386 BIN2Q9UBW5 565 aaPredicted RBP16.93■□□□□ 0.3
CBX3-202ENST00000396386 SLURP2P0DP57 97 aa16.92■□□□□ 0.3
CBX3-202ENST00000396386 CCZ1BP86790 482 aa16.92■□□□□ 0.3
CBX3-202ENST00000396386 CCZ1P86791 482 aaPredicted RBP16.92■□□□□ 0.3
CBX3-202ENST00000396386 KARSQ15046 597 aaKnown RBP16.92■□□□□ 0.3
CBX3-202ENST00000396386 JAKMIP3Q5VZ66 844 aa16.92■□□□□ 0.3
CBX3-202ENST00000396386 TATDN1Q6P1N9 297 aa16.92■□□□□ 0.3
CBX3-202ENST00000396386 TMEM179Q6ZVK1 233 aa16.92■□□□□ 0.3
CBX3-202ENST00000396386 AK8Q96MA6 479 aa16.92■□□□□ 0.3
CBX3-202ENST00000396386 CCSER1Q9C0I3 900 aa16.92■□□□□ 0.3
CBX3-202ENST00000396386 TDRD3Q9H7E2 651 aaKnown RBP16.92■□□□□ 0.3
CBX3-202ENST00000396386 RMND1Q9NWS8 449 aa16.92■□□□□ 0.3
CBX3-202ENST00000396386 EEF2P13639 858 aaKnown RBP16.91■□□□□ 0.3
CBX3-202ENST00000396386 ZNF18P17022 549 aa16.91■□□□□ 0.3
CBX3-202ENST00000396386 UBA7P41226 1012 aa16.91■□□□□ 0.3
CBX3-202ENST00000396386 TTBK2Q6IQ55 1244 aa16.91■□□□□ 0.3
CBX3-202ENST00000396386 DPF2Q92785 391 aa16.91■□□□□ 0.3
CBX3-202ENST00000396386 MKL1Q969V6 931 aa16.91■□□□□ 0.3
CBX3-202ENST00000396386 PSMD1Q99460 953 aa16.91■□□□□ 0.3
CBX3-202ENST00000396386 PDGFDQ9GZP0 370 aaPredicted RBP16.91■□□□□ 0.3
CBX3-202ENST00000396386 TMEM260Q9NX78 707 aa16.91■□□□□ 0.3
CBX3-202ENST00000396386 COL4A5P29400 1685 aa16.91■□□□□ 0.3
CBX3-202ENST00000396386 ZBTB5O15062 677 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 SKILP12757 684 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 ICA1Q05084 483 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 CUL4BQ13620 913 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 RRAGBQ5VZM2 374 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 KCTD1Q719H9 257 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 STAMQ92783 540 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 MTMR8Q96EF0 704 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 BLZF1Q9H2G9 400 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 RIC8AQ9NPQ8 531 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 TMOD2Q9NZR1 351 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 PP2D1A8MPX8 630 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 SFPQP23246 707 aaKnown RBP eCLIP16.9■□□□□ 0.3
CBX3-202ENST00000396386 CDC25AP30304 524 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 RSBN1LQ6PCB5 846 aaPredicted RBP16.9■□□□□ 0.3
CBX3-202ENST00000396386 VSTM4Q8IW00 320 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 MAGEF1Q9HAY2 307 aa16.9■□□□□ 0.3
CBX3-202ENST00000396386 USP17L10C9JJH3 530 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 NRDCO43847 1150 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 PPP1R11O60927 126 aaPredicted RBP16.89■□□□□ 0.29
CBX3-202ENST00000396386 CD44P16070 742 aaKnown RBP16.89■□□□□ 0.29
CBX3-202ENST00000396386 CDK11BP21127 795 aaKnown RBP16.89■□□□□ 0.29
CBX3-202ENST00000396386 SLC16A2P36021 539 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 SEPT2Q15019 361 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 ABCB5Q2M3G0 1257 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 SHROOM1Q2M3G4 852 aaPredicted RBP16.89■□□□□ 0.29
CBX3-202ENST00000396386 SPATA1Q5VX52 437 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 SLFN13Q68D06 897 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 CUL5Q93034 780 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 MED15Q96RN5 788 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 MTRQ99707 1265 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 CUEDC2Q9H467 287 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 MYH7BA7E2Y1 1941 aa16.89■□□□□ 0.29
CBX3-202ENST00000396386 RPN1P04843 607 aaKnown RBP16.88■□□□□ 0.29
CBX3-202ENST00000396386 MYL1P05976 194 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 SLC1A4P43007 532 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 KLHL10Q6JEL2 608 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 ARMCX5Q6P1M9 558 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 CABP7Q86V35 215 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 LARGE2Q8N3Y3 721 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 SLC16A10Q8TF71 515 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms