RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 EDIL3O43854 480 aa17.09■□□□□ 0.33
GPC3-202ENST00000394299 LONP1P36776 959 aaKnown RBP17.09■□□□□ 0.33
GPC3-202ENST00000394299 SEPT2Q15019 361 aa17.09■□□□□ 0.33
GPC3-202ENST00000394299 NONOQ15233 471 aaKnown RBP eCLIP17.09■□□□□ 0.33
GPC3-202ENST00000394299 CERKLQ49MI3 558 aaPredicted RBP17.09■□□□□ 0.33
GPC3-202ENST00000394299 ASPRV1Q53RT3 343 aa17.09■□□□□ 0.33
GPC3-202ENST00000394299 IDI2Q9BXS1 227 aa17.09■□□□□ 0.33
GPC3-202ENST00000394299 SMARCA1P28370 1054 aa17.08■□□□□ 0.33
GPC3-202ENST00000394299 GNA11P29992 359 aa17.08■□□□□ 0.33
GPC3-202ENST00000394299 RRP1BQ14684 758 aaKnown RBP17.08■□□□□ 0.33
GPC3-202ENST00000394299 UBE2SQ16763 222 aa17.08■□□□□ 0.33
GPC3-202ENST00000394299 NAALADL2Q58DX5 795 aa17.08■□□□□ 0.33
GPC3-202ENST00000394299 MRIQ9BWK5 157 aa17.08■□□□□ 0.33
GPC3-202ENST00000394299 ZNF277Q9NRM2 450 aaPredicted RBP17.08■□□□□ 0.33
GPC3-202ENST00000394299 PI4KBQ9UBF8 816 aa17.08■□□□□ 0.33
GPC3-202ENST00000394299 ZBTB12Q9Y330 459 aaPredicted RBP17.08■□□□□ 0.33
GPC3-202ENST00000394299 TRIML1Q8N9V2 468 aa17.08■□□□□ 0.32
GPC3-202ENST00000394299 ENOX1Q8TC92 643 aaKnown RBP17.08■□□□□ 0.32
GPC3-202ENST00000394299 CCDC12Q8WUD4 166 aaPredicted RBP17.08■□□□□ 0.32
GPC3-202ENST00000394299 C16orf45Q96MC5 204 aaPredicted RBP17.08■□□□□ 0.32
GPC3-202ENST00000394299 PPP1R3GB7ZBB8 358 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 CDK11BP21127 795 aaKnown RBP17.07■□□□□ 0.32
GPC3-202ENST00000394299 SNAP25P60880 206 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 KRT25Q7Z3Z0 450 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 REXO1Q8N1G1 1221 aaKnown RBP17.07■□□□□ 0.32
GPC3-202ENST00000394299 UIMC1Q96RL1 719 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 EHD4Q9H223 541 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 TRMT1Q9NXH9 659 aaKnown RBP17.07■□□□□ 0.32
GPC3-202ENST00000394299 SERPINA10Q9UK55 444 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 MAPK8IP1Q9UQF2 711 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 CLRN2A0PK11 232 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 DPEP1P16444 411 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 TECP42680 631 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 FKBP1AP62942 108 aaKnown RBP17.07■□□□□ 0.32
GPC3-202ENST00000394299 NEK8Q86SG6 692 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 POTEDQ86YR6 584 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 RASSF8Q8NHQ8 419 aa17.07■□□□□ 0.32
GPC3-202ENST00000394299 NUP88Q99567 741 aaPredicted RBP17.07■□□□□ 0.32
GPC3-202ENST00000394299 TCP10L2B9ZVM9 353 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 ZNF18P17022 549 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 KCNA3P22001 575 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 STAT6P42226 847 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 HDLBPQ00341 1268 aaKnown RBP17.06■□□□□ 0.32
GPC3-202ENST00000394299 GSDMAQ96QA5 445 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 DHX36Q9H2U1 1008 aaKnown RBP17.06■□□□□ 0.32
GPC3-202ENST00000394299 DISC1Q9NRI5 854 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 UQCRHLA0A096LP55 91 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 UQCRHP07919 91 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 UBA7P41226 1012 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 TTLL6Q8N841 843 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 GJA10Q969M2 543 aa17.06■□□□□ 0.32
GPC3-202ENST00000394299 PNMA6FA0A0J9YX94 578 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 NEMFO60524 1076 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 TDP2O95551 362 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 ADCY7P51828 1080 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 RRAGBQ5VZM2 374 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 TSC1Q92574 1164 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 CCDC34Q96HJ3 373 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 CCDC17Q96LX7 622 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 IMPACTQ9P2X3 320 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 DACH1Q9UI36 760 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 GDAQ9Y2T3 454 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 MYH8P13535 1937 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 MYO3BQ8WXR4 1341 aa17.05■□□□□ 0.32
GPC3-202ENST00000394299 PSMD14O00487 310 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 SLC37A4O43826 429 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 OR52Z1P0C646 297 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 TAL1P17542 331 aaPredicted RBP17.04■□□□□ 0.32
GPC3-202ENST00000394299 TXKP42681 527 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 TATDN1Q6P1N9 297 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 TRIM34Q9BYJ4 488 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 SCAF8Q9UPN6 1271 aaKnown RBP17.04■□□□□ 0.32
GPC3-202ENST00000394299 GTPBP6O43824 516 aaPredicted RBP17.04■□□□□ 0.32
GPC3-202ENST00000394299 TNNI2P48788 182 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 TPD52L1Q16890 204 aaPredicted RBP17.04■□□□□ 0.32
GPC3-202ENST00000394299 SLFN13Q68D06 897 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 CTNND2Q9UQB3 1225 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 SIPA1L1O43166 1804 aa17.04■□□□□ 0.32
GPC3-202ENST00000394299 ERCC5P28715 1186 aaPredicted RBP17.03■□□□□ 0.32
GPC3-202ENST00000394299 TXLNAP40222 546 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 SLC1A4P43007 532 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 GSDMDP57764 484 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 VSTM4Q8IW00 320 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 CDAN1Q8IWY9 1227 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 LARGE2Q8N3Y3 721 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 ESYT2A0FGR8 921 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 GH2P01242 217 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 RPN1P04843 607 aaKnown RBP17.03■□□□□ 0.32
GPC3-202ENST00000394299 DHX8Q14562 1220 aaKnown RBP17.03■□□□□ 0.32
GPC3-202ENST00000394299 CSRNP1Q96S65 589 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 KANSL2Q9H9L4 492 aa17.03■□□□□ 0.32
GPC3-202ENST00000394299 USP17L15C9J2P7 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L13C9JLJ4 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L11C9JVI0 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L18D6R9N7 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L22D6RA61 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L17D6RBQ6 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L19D6RCP7 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L20D6RJB6 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 ZBTB5O15062 677 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms