RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 PTPRAP18433 802 aa14.21□□□□□ -0.13
CIITA-202ENST00000381835 U2AF2P26368 475 aaKnown RBP eCLIP14.21□□□□□ -0.13
CIITA-202ENST00000381835 TYW1BQ6NUM6 668 aa14.21□□□□□ -0.13
CIITA-202ENST00000381835 FTOQ9C0B1 505 aaKnown RBP eCLIP14.21□□□□□ -0.13
CIITA-202ENST00000381835 BARHL2Q9NY43 387 aa14.21□□□□□ -0.13
CIITA-202ENST00000381835 KRT2P35908 639 aa14.21□□□□□ -0.13
CIITA-202ENST00000381835 SPP2Q13103 211 aa14.21□□□□□ -0.13
CIITA-202ENST00000381835 MYSM1Q5VVJ2 828 aa14.21□□□□□ -0.13
CIITA-202ENST00000381835 NOSTRINQ8IVI9 506 aa14.21□□□□□ -0.13
CIITA-202ENST00000381835 SMAP1Q8IYB5 467 aaPredicted RBP14.21□□□□□ -0.13
CIITA-202ENST00000381835 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.21□□□□□ -0.13
CIITA-202ENST00000381835 KCNF1Q9H3M0 494 aa14.21□□□□□ -0.13
CIITA-202ENST00000381835 STXBP3O00186 592 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 NF2P35240 595 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 NAPAP54920 295 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 DGKZQ13574 1117 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 MTMR2Q13614 643 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 MAP3K11Q16584 847 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 MAP1SQ66K74 1059 aaPredicted RBP14.2□□□□□ -0.14
CIITA-202ENST00000381835 SAMD1Q6SPF0 538 aaPredicted RBP14.2□□□□□ -0.14
CIITA-202ENST00000381835 ZNF710Q8N1W2 664 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 ZNF526Q8TF50 670 aaPredicted RBP14.2□□□□□ -0.14
CIITA-202ENST00000381835 COA7Q96BR5 231 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 ZNF396Q96N95 335 aaPredicted RBP14.2□□□□□ -0.14
CIITA-202ENST00000381835 USP28Q96RU2 1077 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 NUP62CLQ9H1M0 184 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 FOXP1Q9H334 677 aaPredicted RBP14.2□□□□□ -0.14
CIITA-202ENST00000381835 BRMS1Q9HCU9 246 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 SH3GLB2Q9NR46 395 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 CFAP45Q9UL16 551 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 PYCARDQ9ULZ3 195 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 ZHX2Q9Y6X8 837 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 PNMA6FA0A0J9YX94 578 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 STAT2P52630 851 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 TTLL12Q14166 644 aaPredicted RBP14.2□□□□□ -0.14
CIITA-202ENST00000381835 NPY5RQ15761 445 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 CAMK4Q16566 473 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 CCDC148Q8NFR7 591 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 FAM200AQ8TCP9 573 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 SPATA32Q96LK8 384 aa14.2□□□□□ -0.14
CIITA-202ENST00000381835 TRIM75PA6NK02 468 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 ZBTB5O15062 677 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 SNAP25P60880 206 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 MAP3K9P80192 1104 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 VGLL4Q14135 290 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 SYDE2Q5VT97 1194 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.19□□□□□ -0.14
CIITA-202ENST00000381835 SCAND2PQ9GZW5 306 aaPredicted RBP14.19□□□□□ -0.14
CIITA-202ENST00000381835 KIAA1683Q9H0B3 1180 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 AS3MTQ9HBK9 375 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 PHIPQ8WWQ0 1821 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 GOLGA6L4A6NEF3 574 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 ADAMTS3O15072 1205 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 LIG1P18858 919 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 CALML3P27482 149 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 IREB2P48200 963 aaKnown RBP14.19□□□□□ -0.14
CIITA-202ENST00000381835 CDC37Q16543 378 aaPredicted RBP14.19□□□□□ -0.14
CIITA-202ENST00000381835 MOB2Q70IA6 237 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 ZNF280CQ8ND82 737 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 OTOFQ9HC10 1997 aa14.19□□□□□ -0.14
CIITA-202ENST00000381835 ELP1O95163 1332 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 PPP1R11O60927 126 aaPredicted RBP14.18□□□□□ -0.14
CIITA-202ENST00000381835 TYRO3Q06418 890 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 QRICH1Q2TAL8 776 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 NOL9Q5SY16 702 aaKnown RBP14.18□□□□□ -0.14
CIITA-202ENST00000381835 BLIDQ8IZY5 108 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 CCDC12Q8WUD4 166 aaPredicted RBP14.18□□□□□ -0.14
CIITA-202ENST00000381835 LEO1Q8WVC0 666 aaPredicted RBP14.18□□□□□ -0.14
CIITA-202ENST00000381835 MTMR8Q96EF0 704 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 CSADQ9Y600 493 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 SMCHD1A6NHR9 2005 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 FAM205CA6NFA0 338 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 SMCO2A6NFE2 343 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 BACE1P56817 501 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 ATL3Q6DD88 541 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 BTNL9Q6UXG8 535 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 KIFC2Q96AC6 838 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 WDR18Q9BV38 432 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 TNMDQ9H2S6 317 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 ZNF408Q9H9D4 720 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 NMRK2Q9NPI5 230 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 FBXO28Q9NVF7 368 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 PRDM4Q9UKN5 801 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 PRR12Q9ULL5 1215 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 PCDHA4Q9UN74 947 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 CLIC4Q9Y696 253 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 MRVI1Q9Y6F6 885 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 SNCAIPQ9Y6H5 919 aa14.18□□□□□ -0.14
CIITA-202ENST00000381835 TRAF5O00463 557 aa14.17□□□□□ -0.14
CIITA-202ENST00000381835 ATP2B1P20020 1258 aa14.17□□□□□ -0.14
CIITA-202ENST00000381835 FMR1Q06787 632 aaKnown RBP eCLIP14.17□□□□□ -0.14
CIITA-202ENST00000381835 NOM1Q5C9Z4 860 aaKnown RBP14.17□□□□□ -0.14
CIITA-202ENST00000381835 EARS2Q5JPH6 523 aaKnown RBP14.17□□□□□ -0.14
CIITA-202ENST00000381835 LUZP1Q86V48 1076 aa14.17□□□□□ -0.14
CIITA-202ENST00000381835 RASGRP4Q8TDF6 673 aa14.17□□□□□ -0.14
CIITA-202ENST00000381835 CHURC1Q8WUH1 139 aa14.17□□□□□ -0.14
CIITA-202ENST00000381835 LPAR1Q92633 364 aa14.17□□□□□ -0.14
CIITA-202ENST00000381835 EMILIN3Q9NT22 766 aa14.17□□□□□ -0.14
CIITA-202ENST00000381835 USP14P54578 494 aa14.16□□□□□ -0.14
CIITA-202ENST00000381835 HMGCS2P54868 508 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms