RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 BIRC3Q13489 604 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 DCAF17Q5H9S7 520 aaPredicted RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 DAB2IPQ5VWQ8 1189 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 MICU3Q86XE3 530 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 DHX58Q96C10 678 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 CCDC141Q6ZP82 1450 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 PDE5AO76074 875 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 SLC9A1P19634 815 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 ETF1P62495 437 aaKnown RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 ADCY2Q08462 1091 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 SFMBT2Q5VUG0 894 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 DTX3LQ8TDB6 740 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 ATP8B4Q8TF62 1192 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 CSRNP1Q96S65 589 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 ZNF263O14978 683 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 RPN1P04843 607 aaKnown RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 ACTN1P12814 892 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 GRK2P25098 689 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 RNASE9P60153 205 aaKnown RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 WASHC5Q12768 1159 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 BFSP2Q13515 415 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 PPP1R14BQ96C90 147 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 PDCD10Q9BUL8 212 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 ETAA1Q9NY74 926 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 IFIT1P09914 478 aaKnown RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 ATF2P15336 505 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 DISC1Q9NRI5 854 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 CCDC88BA6NC98 1476 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 CASP2P42575 452 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 ITGB3BPQ13352 177 aaPredicted RBP9.5□□□□□ -0.89
LIG3-202ENST00000378526 RTN1Q16799 776 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 OLFML1Q6UWY5 402 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 C17orf50Q8WW18 174 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 RPAP3Q9H6T3 665 aaPredicted RBP9.5□□□□□ -0.89
LIG3-202ENST00000378526 RHBDL2Q9NX52 303 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 RTL9Q8NET4 1388 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 RGS20O76081 388 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 NUP62P37198 522 aaPredicted RBP9.5□□□□□ -0.89
LIG3-202ENST00000378526 SNAP25P60880 206 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 KRT79Q5XKE5 535 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 ABCF3Q9NUQ8 709 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 STRNO43815 780 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 EIF2S1P05198 315 aaKnown RBP9.5□□□□□ -0.89
LIG3-202ENST00000378526 CALM1P0DP23 149 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 CALM2P0DP24 149 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 CALM3P0DP25 149 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 SMARCA1P28370 1054 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 TUBA4AP68366 448 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 LRRC8EQ6NSJ5 796 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 NANOGNBQ7Z5D8 188 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 LRRC8AQ8IWT6 810 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 KLC2Q9H0B6 622 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 PDP2Q9P2J9 529 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 IPO5O00410 1097 aaKnown RBP9.5□□□□□ -0.89
LIG3-202ENST00000378526 HOXC8P31273 242 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 PAK1Q13153 545 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 TJAP1Q5JTD0 557 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 UBE4BO95155 1302 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 TPP2P29144 1249 aaPredicted RBP9.5□□□□□ -0.89
LIG3-202ENST00000378526 PSME1Q06323 249 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 RUNX1T1Q06455 604 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 CUL1Q13616 776 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 FRA10AC1Q70Z53 315 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 MICALL2Q8IY33 904 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 PHF21AQ96BD5 680 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 INTUQ9ULD6 942 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 SERPINB3P29508 390 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 NSFP46459 744 aaKnown RBP9.5□□□□□ -0.89
LIG3-202ENST00000378526 NLRP12P59046 1061 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 WTAPQ15007 396 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 MFSD4BQ5TF39 518 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 C1orf146Q5VVC0 180 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 MPRIPQ6WCQ1 1025 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 DENND6AQ8IWF6 608 aa9.5□□□□□ -0.89
LIG3-202ENST00000378526 ZNF189O75820 626 aaPredicted RBP9.49□□□□□ -0.89
LIG3-202ENST00000378526 MAGEA1P43355 309 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 PDE1BQ01064 536 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 NR1H3Q13133 447 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 CRLF3Q8IUI8 442 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 ATP6V1E2Q96A05 226 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 MCRS1Q96EZ8 462 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 SPATA17Q96L03 361 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 TRPV6Q9H1D0 765 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 CLEC4MQ9H2X3 399 aaPredicted RBP9.49□□□□□ -0.89
LIG3-202ENST00000378526 SLC13A4Q9UKG4 626 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 G3BP2Q9UN86 482 aaKnown RBP9.49□□□□□ -0.89
LIG3-202ENST00000378526 H7C0S8 307 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 MARCKSP29966 332 aaPredicted RBP9.49□□□□□ -0.89
LIG3-202ENST00000378526 KRT9P35527 623 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 MYO1EQ12965 1108 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 PPP2R5CQ13362 524 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 CYTH2Q99418 400 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 TPCN1Q9ULQ1 816 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 HPS5Q9UPZ3 1129 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 AP4S1Q9Y587 144 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 BIRC5O15392 142 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 DCUN1D2Q6PH85 259 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 CCDC149Q6ZUS6 474 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 STX12Q86Y82 276 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 HAUS4Q9H6D7 363 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms