RNA–Protein interactions for RNA: ENST00000376643.6

HDAC6-204, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 907 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-204ENST00000376643 MFAP1P55081 439 aaKnown RBP17.45■□□□□ 0.38
HDAC6-204ENST00000376643 ALX1Q15699 326 aa17.45■□□□□ 0.38
HDAC6-204ENST00000376643 RCSD1Q6JBY9 416 aa17.45■□□□□ 0.38
HDAC6-204ENST00000376643 CCDC174Q6PII3 467 aa17.45■□□□□ 0.38
HDAC6-204ENST00000376643 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.45■□□□□ 0.38
HDAC6-204ENST00000376643 ELP1O95163 1332 aa17.45■□□□□ 0.38
HDAC6-204ENST00000376643 SYNRGQ9UMZ2 1314 aa17.45■□□□□ 0.38
HDAC6-204ENST00000376643 ORC4O43929 436 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 RANBP6O60518 1105 aaKnown RBP17.44■□□□□ 0.38
HDAC6-204ENST00000376643 SNAI1O95863 264 aaPredicted RBP17.44■□□□□ 0.38
HDAC6-204ENST00000376643 RAG1P15918 1043 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 TAL1P17542 331 aaPredicted RBP17.44■□□□□ 0.38
HDAC6-204ENST00000376643 ARMCX2Q7L311 632 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 ANKRD33Q7Z3H0 272 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 OTUD7AQ8TE49 926 aaPredicted RBP17.44■□□□□ 0.38
HDAC6-204ENST00000376643 DCAF4Q8WV16 495 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 BADQ92934 168 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 SEZ6LQ9BYH1 1024 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 RNF146Q9NTX7 359 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 ZMYM6O95789 1325 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 SALL3Q9BXA9 1300 aa17.44■□□□□ 0.38
HDAC6-204ENST00000376643 KIAA0355O15063 1070 aa17.43■□□□□ 0.38
HDAC6-204ENST00000376643 PQBP1O60828 265 aaKnown RBP17.43■□□□□ 0.38
HDAC6-204ENST00000376643 C6orf222P0C671 652 aaPredicted RBP17.43■□□□□ 0.38
HDAC6-204ENST00000376643 MCCP23508 829 aa17.43■□□□□ 0.38
HDAC6-204ENST00000376643 PDE1AP54750 535 aa17.43■□□□□ 0.38
HDAC6-204ENST00000376643 SMAD3P84022 425 aaKnown RBP17.43■□□□□ 0.38
HDAC6-204ENST00000376643 MCMDC2Q4G0Z9 681 aa17.43■□□□□ 0.38
HDAC6-204ENST00000376643 KLHDC9Q8NEP7 349 aa17.43■□□□□ 0.38
HDAC6-204ENST00000376643 HOMER2Q9NSB8 354 aa17.43■□□□□ 0.38
HDAC6-204ENST00000376643 TMEM39AQ9NV64 488 aa17.43■□□□□ 0.38
HDAC6-204ENST00000376643 LTBP2Q14767 1821 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 LOC102724159A0A0B4J2E5 919 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 ZEB2O60315 1214 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 GJA9P57773 515 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 PWP2Q15269 919 aaKnown RBP17.42■□□□□ 0.38
HDAC6-204ENST00000376643 KCNA10Q16322 511 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 CCDC144BQ3MJ40 725 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 CCDC129Q6ZRS4 1044 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 Q7L0L9 218 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 UPF3AQ9H1J1 476 aaKnown RBP17.42■□□□□ 0.38
HDAC6-204ENST00000376643 TOMM22Q9NS69 142 aa17.42■□□□□ 0.38
HDAC6-204ENST00000376643 TMEM265A0A087WTH1 108 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 A0A0U1RQG5 324 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-204ENST00000376643 TRIM43BA6NCK2 446 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 TLR3O15455 904 aaKnown RBP17.41■□□□□ 0.38
HDAC6-204ENST00000376643 CABYRO75952 493 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 FPGSQ05932 587 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 SHHQ15465 462 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 CCDC96Q2M329 555 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 CCDC144CPQ8IYA2 1237 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 FAM133AQ8N9E0 248 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 VTI1AQ96AJ9 217 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 TRIM43Q96BQ3 446 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-204ENST00000376643 TRERF1Q96PN7 1200 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 CRBNQ96SW2 442 aa17.41■□□□□ 0.38
HDAC6-204ENST00000376643 MPHOSPH6Q99547 160 aaKnown RBP17.41■□□□□ 0.38
HDAC6-204ENST00000376643 RWDD1Q9H446 243 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-204ENST00000376643 RNF41Q9H4P4 317 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-204ENST00000376643 A1CFQ9NQ94 594 aaKnown RBP17.41■□□□□ 0.38
HDAC6-204ENST00000376643 FGRP09769 529 aa17.4■□□□□ 0.38
HDAC6-204ENST00000376643 TOP1P11387 765 aaKnown RBP17.4■□□□□ 0.38
HDAC6-204ENST00000376643 ALAS1P13196 640 aa17.4■□□□□ 0.38
HDAC6-204ENST00000376643 NOVP48745 357 aa17.4■□□□□ 0.38
HDAC6-204ENST00000376643 CTDSPL2Q05D32 466 aa17.4■□□□□ 0.38
HDAC6-204ENST00000376643 GNASQ5JWF2 1037 aa17.4■□□□□ 0.38
HDAC6-204ENST00000376643 NOL8Q76FK4 1167 aaKnown RBP17.4■□□□□ 0.38
HDAC6-204ENST00000376643 RNPC3Q96LT9 517 aaKnown RBP17.4■□□□□ 0.38
HDAC6-204ENST00000376643 TCP11L1Q9NUJ3 509 aa17.4■□□□□ 0.38
HDAC6-204ENST00000376643 ADD3Q9UEY8 706 aaKnown RBP17.4■□□□□ 0.38
HDAC6-204ENST00000376643 CCPG1Q9ULG6 757 aa17.4■□□□□ 0.38
HDAC6-204ENST00000376643 PRR12Q9ULL5 1215 aa17.4■□□□□ 0.38
HDAC6-204ENST00000376643 SMCHD1A6NHR9 2005 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 TRIM6-TRIM34B2RNG4 842 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 ICAM1P05362 532 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 NKX3-2P78367 333 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 TNFAIP2Q03169 654 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 CCSAPQ6IQ19 270 aaPredicted RBP17.39■□□□□ 0.37
HDAC6-204ENST00000376643 KCTD1Q719H9 257 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 SH3RF1Q7Z6J0 888 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 LENG1Q96BZ8 264 aaPredicted RBP17.39■□□□□ 0.37
HDAC6-204ENST00000376643 AGBL1Q96MI9 1066 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 TTC14Q96N46 770 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 AP5M1Q9H0R1 490 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 IL17RBQ9NRM6 502 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 Q9Y3F1 56 aa17.39■□□□□ 0.37
HDAC6-204ENST00000376643 ASGR1P07306 291 aa17.38■□□□□ 0.37
HDAC6-204ENST00000376643 PPIGQ13427 754 aaKnown RBP eCLIP17.38■□□□□ 0.371e-7■■■□□ 17.6
HDAC6-204ENST00000376643 CCDC178Q5BJE1 867 aa17.38■□□□□ 0.37
HDAC6-204ENST00000376643 IQSEC1Q6DN90 963 aa17.38■□□□□ 0.37
HDAC6-204ENST00000376643 FGD4Q96M96 766 aa17.38■□□□□ 0.37
HDAC6-204ENST00000376643 VTA1Q9NP79 307 aa17.38■□□□□ 0.37
HDAC6-204ENST00000376643 ZNF536O15090 1300 aa17.38■□□□□ 0.37
HDAC6-204ENST00000376643 CCDC171Q6TFL3 1326 aa17.38■□□□□ 0.37
HDAC6-204ENST00000376643 B4DLN1 442 aa17.37■□□□□ 0.37
HDAC6-204ENST00000376643 ARVCFO00192 962 aa17.37■□□□□ 0.37
HDAC6-204ENST00000376643 HIP1O00291 1037 aa17.37■□□□□ 0.37
HDAC6-204ENST00000376643 DLL1O00548 723 aa17.37■□□□□ 0.37
HDAC6-204ENST00000376643 FOXP2O15409 715 aa17.37■□□□□ 0.37
HDAC6-204ENST00000376643 TIMP1P01033 207 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms