RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SYN1P17600 705 aa25.58■■□□□ 1.69
CCDC28B-201ENST00000373602 TKFCQ3LXA3 575 aa25.58■■□□□ 1.69
CCDC28B-201ENST00000373602 TTC22Q5TAA0 569 aa25.58■■□□□ 1.69
CCDC28B-201ENST00000373602 GDF15Q99988 308 aa25.58■■□□□ 1.69
CCDC28B-201ENST00000373602 ACAD9Q9H845 621 aa25.58■■□□□ 1.69
CCDC28B-201ENST00000373602 HOMER2Q9NSB8 354 aa25.58■■□□□ 1.69
CCDC28B-201ENST00000373602 NEDD4P46934 1319 aa25.58■■□□□ 1.69
CCDC28B-201ENST00000373602 SMCHD1A6NHR9 2005 aa25.58■■□□□ 1.68
CCDC28B-201ENST00000373602 A0A1W2PPC1 479 aa25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 SNAI1O95863 264 aaPredicted RBP25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 RARBP10826 455 aa25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 GSPT1P15170 499 aaKnown RBP25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 NT5C2P49902 561 aa25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 LRRC41Q15345 812 aa25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 BTNL9Q6UXG8 535 aa25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 ESR2Q92731 530 aa25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 FGD4Q96M96 766 aa25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 RNF146Q9NTX7 359 aa25.57■■□□□ 1.68
CCDC28B-201ENST00000373602 AKR1A1P14550 325 aa25.56■■□□□ 1.68
CCDC28B-201ENST00000373602 BMP8BP34820 402 aa25.56■■□□□ 1.68
CCDC28B-201ENST00000373602 TTBK2Q6IQ55 1244 aa25.56■■□□□ 1.68
CCDC28B-201ENST00000373602 XPNPEP3Q9NQH7 507 aa25.56■■□□□ 1.68
CCDC28B-201ENST00000373602 ATN1P54259 1190 aaPredicted RBP25.55■■□□□ 1.68
CCDC28B-201ENST00000373602 SNAP25P60880 206 aa25.55■■□□□ 1.68
CCDC28B-201ENST00000373602 CCDC174Q6PII3 467 aa25.55■■□□□ 1.68
CCDC28B-201ENST00000373602 TRERF1Q96PN7 1200 aa25.55■■□□□ 1.68
CCDC28B-201ENST00000373602 LAMA4Q16363 1823 aa25.55■■□□□ 1.68
CCDC28B-201ENST00000373602 MYCNP04198 464 aaPredicted RBP25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 PDHBP11177 359 aa25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 ALAS1P13196 640 aa25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 FAM133AQ8N9E0 248 aa25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 IL25Q9H293 177 aa25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 RANBP17Q9H2T7 1088 aaKnown RBP25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 A1CFQ9NQ94 594 aaKnown RBP25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 CTNNA3Q9UI47 895 aa25.54■■□□□ 1.68
CCDC28B-201ENST00000373602 POTEB2H3BUK9 544 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 ICAM1P05362 532 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 SLC16A2P36021 539 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 MAGEA10P43363 369 aaPredicted RBP25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 RTP1P59025 263 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 IMMTQ16891 758 aaKnown RBP25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 SYDE2Q5VT97 1194 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 SLC39A5Q6ZMH5 540 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 DGKHQ86XP1 1220 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 GPCPD1Q9NPB8 672 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 FAM184BQ9ULE4 1060 aa25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 FRMPD2Q68DX3 1309 aaPredicted RBP25.53■■□□□ 1.68
CCDC28B-201ENST00000373602 PGK1P00558 417 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 SNHG28P0DPA3 235 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 ADCYAP1R1P41586 468 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 CNTN2Q02246 1040 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 SNX17Q15036 470 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 ARMCX2Q7L311 632 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 RNF180Q86T96 592 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 ZKSCAN3Q9BRR0 538 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 ABHD16BQ9H3Z7 469 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 ZHX1Q9UKY1 873 aaPredicted RBP25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 CCPG1Q9ULG6 757 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 PHF24Q9UPV7 400 aa25.52■■□□□ 1.68
CCDC28B-201ENST00000373602 KDM4AO75164 1064 aa25.51■■□□□ 1.67
CCDC28B-201ENST00000373602 ZNF543Q08ER8 600 aa25.51■■□□□ 1.67
CCDC28B-201ENST00000373602 ACVR2BQ13705 512 aa25.51■■□□□ 1.67
CCDC28B-201ENST00000373602 CCDC178Q5BJE1 867 aa25.51■■□□□ 1.67
CCDC28B-201ENST00000373602 MUM1L1Q5H9M0 696 aa25.51■■□□□ 1.67
CCDC28B-201ENST00000373602 LENG1Q96BZ8 264 aaPredicted RBP25.51■■□□□ 1.67
CCDC28B-201ENST00000373602 RAD50Q92878 1312 aa25.51■■□□□ 1.67
CCDC28B-201ENST00000373602 ADAMTS4O75173 837 aa25.5■■□□□ 1.67
CCDC28B-201ENST00000373602 IQCA1Q86XH1 822 aa25.5■■□□□ 1.67
CCDC28B-201ENST00000373602 CCDC144CPQ8IYA2 1237 aa25.5■■□□□ 1.67
CCDC28B-201ENST00000373602 ANKS1AQ92625 1134 aa25.5■■□□□ 1.67
CCDC28B-201ENST00000373602 SOWAHBA6NEL2 793 aa25.49■■□□□ 1.67
CCDC28B-201ENST00000373602 B4E1Z4 1266 aa25.49■■□□□ 1.67
CCDC28B-201ENST00000373602 C1orf53Q5VUE5 145 aa25.49■■□□□ 1.67
CCDC28B-201ENST00000373602 FERMT2Q96AC1 680 aa25.49■■□□□ 1.67
CCDC28B-201ENST00000373602 KATNBL1Q9H079 304 aa25.49■■□□□ 1.67
CCDC28B-201ENST00000373602 CYP39A1Q9NYL5 469 aa25.49■■□□□ 1.67
CCDC28B-201ENST00000373602 PCDH10Q9P2E7 1040 aa25.49■■□□□ 1.67
CCDC28B-201ENST00000373602 ATP11BQ9Y2G3 1177 aa25.49■■□□□ 1.67
CCDC28B-201ENST00000373602 MCM3APO60318 1980 aa25.48■■□□□ 1.67
CCDC28B-201ENST00000373602 DUSP11O75319 330 aaKnown RBP25.48■■□□□ 1.67
CCDC28B-201ENST00000373602 CHMLP26374 656 aa25.48■■□□□ 1.67
CCDC28B-201ENST00000373602 ZSCAN10Q96SZ4 725 aaPredicted RBP25.48■■□□□ 1.67
CCDC28B-201ENST00000373602 KRT23Q9C075 422 aa25.48■■□□□ 1.67
CCDC28B-201ENST00000373602 ZSWIM5Q9P217 1185 aa25.48■■□□□ 1.67
CCDC28B-201ENST00000373602 SYNRGQ9UMZ2 1314 aa25.47■■□□□ 1.67
CCDC28B-201ENST00000373602 ASB14A6NK59 587 aa25.47■■□□□ 1.67
CCDC28B-201ENST00000373602 CCDC144BQ3MJ40 725 aa25.47■■□□□ 1.67
CCDC28B-201ENST00000373602 GPATCH4Q5T3I0 446 aaKnown RBP25.47■■□□□ 1.67
CCDC28B-201ENST00000373602 KLHDC9Q8NEP7 349 aa25.47■■□□□ 1.67
CCDC28B-201ENST00000373602 RUFY2Q8WXA3 655 aa25.47■■□□□ 1.67
CCDC28B-201ENST00000373602 TSEN34Q9BSV6 310 aaKnown RBP25.47■■□□□ 1.67
CCDC28B-201ENST00000373602 CNNM2Q9H8M5 875 aa25.47■■□□□ 1.67
CCDC28B-201ENST00000373602 RANBP2P49792 3224 aaKnown RBP25.46■■□□□ 1.67
CCDC28B-201ENST00000373602 TRIM60Q495X7 471 aa25.46■■□□□ 1.67
CCDC28B-201ENST00000373602 NSMFQ6X4W1 530 aa25.46■■□□□ 1.67
CCDC28B-201ENST00000373602 PNMA1Q8ND90 353 aa25.46■■□□□ 1.67
CCDC28B-201ENST00000373602 PNMA2Q9UL42 364 aa25.46■■□□□ 1.67
CCDC28B-201ENST00000373602 ASTN1O14525 1302 aa25.45■■□□□ 1.66
CCDC28B-201ENST00000373602 ADCY6O43306 1168 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms