RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ADSSL1Q8N142 457 aa15.32■□□□□ 0.04
USP49-201ENST00000373006 ZNF507Q8TCN5 953 aa15.32■□□□□ 0.04
USP49-201ENST00000373006 BCAS4Q8TDM0 211 aa15.32■□□□□ 0.04
USP49-201ENST00000373006 PIGBQ92521 554 aa15.32■□□□□ 0.04
USP49-201ENST00000373006 LRRC1Q9BTT6 524 aa15.32■□□□□ 0.04
USP49-201ENST00000373006 TNS3Q68CZ2 1445 aa15.31■□□□□ 0.04
USP49-201ENST00000373006 STARD3NLO95772 234 aa15.31■□□□□ 0.04
USP49-201ENST00000373006 TROAPQ12815 778 aa15.31■□□□□ 0.04
USP49-201ENST00000373006 SRBD1Q8N5C6 995 aaKnown RBP15.31■□□□□ 0.04
USP49-201ENST00000373006 RMND1Q9NWS8 449 aa15.31■□□□□ 0.04
USP49-201ENST00000373006 SAMM50Q9Y512 469 aa15.31■□□□□ 0.04
USP49-201ENST00000373006 RTL9Q8NET4 1388 aa15.31■□□□□ 0.04
USP49-201ENST00000373006 NKRFO15226 690 aaKnown RBP eCLIP15.31■□□□□ 0.04
USP49-201ENST00000373006 PLEKP08567 350 aaPredicted RBP15.31■□□□□ 0.04
USP49-201ENST00000373006 RASGRP4Q8TDF6 673 aa15.31■□□□□ 0.04
USP49-201ENST00000373006 EHD2Q9NZN4 543 aa15.31■□□□□ 0.04
USP49-201ENST00000373006 MAGEC2Q9UBF1 373 aaPredicted RBP15.31■□□□□ 0.04
USP49-201ENST00000373006 FBXW10Q5XX13 1052 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.3■□□□□ 0.04
USP49-201ENST00000373006 ZNHIT6Q9NWK9 470 aaKnown RBP15.3■□□□□ 0.04
USP49-201ENST00000373006 LRWD1Q9UFC0 647 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 PNPLA7Q6ZV29 1317 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 A0A087WUV0 522 aaPredicted RBP15.3■□□□□ 0.04
USP49-201ENST00000373006 RASSF10A6NK89 507 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 CYLC1P35663 651 aaPredicted RBP15.3■□□□□ 0.04
USP49-201ENST00000373006 TBC1D8BQ0IIM8 1120 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 CCDC96Q2M329 555 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 TUBGCP2Q9BSJ2 902 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 CAPS2Q9BXY5 557 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 FAM169AQ9Y6X4 670 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 MROH5Q6ZUA9 1318 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 BCL9LQ86UU0 1499 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 EBAG9O00559 213 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 RCAN1P53805 252 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 DYNLL1P63167 89 aaKnown RBP15.3■□□□□ 0.04
USP49-201ENST00000373006 GNGT1P63211 74 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 RPGRIP1Q96KN7 1286 aa15.3■□□□□ 0.04
USP49-201ENST00000373006 WTIPA6NIX2 430 aaPredicted RBP15.29■□□□□ 0.04
USP49-201ENST00000373006 KIF5AQ12840 1032 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 EHBP1Q8NDI1 1231 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 KAT2BQ92831 832 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 FAM184BQ9ULE4 1060 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 ZBTB1Q9Y2K1 713 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 A0A1W2PQC6 194 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 ERLIN2O94905 339 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 FAM47AQ5JRC9 791 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 TMTC3Q6ZXV5 915 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 IQCA1Q86XH1 822 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 CSGALNACT2Q8N6G5 542 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 ZNF526Q8TF50 670 aaPredicted RBP15.29■□□□□ 0.04
USP49-201ENST00000373006 MLXIPQ9HAP2 919 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 CAPN6Q9Y6Q1 641 aa15.29■□□□□ 0.04
USP49-201ENST00000373006 MAGEB6P1A0A0J9YX57 407 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 ZNF263O14978 683 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 SHOX2O60902 331 aaPredicted RBP15.28■□□□□ 0.04
USP49-201ENST00000373006 PPP2R5BQ15173 497 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 SLC4A8Q2Y0W8 1093 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 CREG2Q8IUH2 290 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 ANKRD18AQ8IVF6 992 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 AENQ8WTP8 325 aaKnown RBP15.28■□□□□ 0.04
USP49-201ENST00000373006 EXOC1Q9NV70 894 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 ERCC3P19447 782 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 EEF1GP26641 437 aaKnown RBP15.28■□□□□ 0.04
USP49-201ENST00000373006 DNM2P50570 870 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 NKX1-1Q15270 411 aaPredicted RBP15.28■□□□□ 0.04
USP49-201ENST00000373006 NAALADL2Q58DX5 795 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 MTA3Q9BTC8 594 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 CXorf56Q9H5V9 222 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 PDS5AQ29RF7 1337 aaKnown RBP15.28■□□□□ 0.04
USP49-201ENST00000373006 COL18A1P39060 1754 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 MAP2K2P36507 400 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 PSEN1P49768 467 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 ATP2B2Q01814 1243 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 MEA1Q16626 185 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 KCTD16Q68DU8 428 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 ANKRD13CQ8N6S4 541 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 GPKOWQ92917 476 aaPredicted RBP eCLIP15.28■□□□□ 0.04
USP49-201ENST00000373006 ARL8AQ96BM9 186 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 CCDC42Q96M95 316 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 CENPHQ9H3R5 247 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 DISC1Q9NRI5 854 aa15.28■□□□□ 0.04
USP49-201ENST00000373006 H0YHG0 523 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 PSMA7O14818 248 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 MOCS3O95396 460 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 SRGNP10124 158 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 SCG2P13521 617 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 CCDC70Q6NSX1 233 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 TYW1BQ6NUM6 668 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 NFRKBQ6P4R8 1299 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 RBM28Q9NW13 759 aaKnown RBP15.27■□□□□ 0.04
USP49-201ENST00000373006 CNTNAP5Q8WYK1 1306 aa15.27■□□□□ 0.04
USP49-201ENST00000373006 PPFIA1Q13136 1202 aa15.27■□□□□ 0.03
USP49-201ENST00000373006 TSEN2Q8NCE0 465 aaKnown RBP15.27■□□□□ 0.03
USP49-201ENST00000373006 YY1AP1Q9H869 796 aa15.27■□□□□ 0.03
USP49-201ENST00000373006 BCCIPQ9P287 314 aaKnown RBP eCLIP15.27■□□□□ 0.03
USP49-201ENST00000373006 CHD4Q14839 1912 aa15.27■□□□□ 0.03
USP49-201ENST00000373006 NUTM2BA6NNL0 878 aaPredicted RBP15.26■□□□□ 0.03
USP49-201ENST00000373006 NUTM2EB1AL46 878 aaPredicted RBP15.26■□□□□ 0.03
USP49-201ENST00000373006 MTIF2P46199 727 aaKnown RBP15.26■□□□□ 0.03
USP49-201ENST00000373006 ATP1A2P50993 1020 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms