RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 ZHX2Q9Y6X8 837 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 EZH2Q15910 746 aaKnown RBP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 TRMT44Q8IYL2 757 aaKnown RBP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 PRDX5P30044 214 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 FTOQ9C0B1 505 aaKnown RBP eCLIP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 AGLP35573 1532 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 LIFRP42702 1097 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 PCDHA7Q9UN72 937 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 SOS2Q07890 1332 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 MED14O60244 1454 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 ATP2A1O14983 1001 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 MARK3P27448 753 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 PIGSQ96S52 555 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 CCDC77Q9BR77 488 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 NUP58Q9BVL2 599 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 DDX25Q9UHL0 483 aaKnown RBP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 AGTPBP1Q9UPW5 1226 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 GLI2P10070 1586 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 POLGP54098 1239 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 DGKHQ86XP1 1220 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 PAIP2Q9BPZ3 127 aaKnown RBP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 SH2B2O14492 632 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 SLU7O95391 586 aaKnown RBP12.84□□□□□ -0.35
SYNE1-204ENST00000367248 CTR9Q6PD62 1173 aa12.84□□□□□ -0.35
SYNE1-204ENST00000367248 ZBBXA8MT70 800 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 NDC80O14777 642 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 PNOCQ13519 176 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 MYOCDQ8IZQ8 938 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 USTQ9Y2C2 406 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 IRX5P78411 483 aaPredicted RBP12.83□□□□□ -0.36
SYNE1-204ENST00000367248 KIAA1468Q9P260 1216 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 CYP2J2P51589 502 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 ZNF445P59923 1031 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 PTGDRQ13258 359 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 PPP1R9BQ96SB3 815 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 PARP2Q9UGN5 583 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 SEPT9Q9UHD8 586 aaPredicted RBP12.83□□□□□ -0.36
SYNE1-204ENST00000367248 ZBTB8OSQ8IWT0 167 aa12.83□□□□□ -0.36
SYNE1-204ENST00000367248 PRDM5Q9NQX1 630 aaPredicted RBP12.83□□□□□ -0.36
SYNE1-204ENST00000367248 MYL3P08590 195 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 KCNA4P22459 653 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 TMOD1P28289 359 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 CCDC63Q8NA47 563 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 MARCH10Q8NA82 808 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-204ENST00000367248 CCDC114Q96M63 670 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 RPS6KC1Q96S38 1066 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 ZSWIM5Q9P217 1185 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 LONP1P36776 959 aaKnown RBP12.82□□□□□ -0.36
SYNE1-204ENST00000367248 ADPGKQ9BRR6 497 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 MYO3BQ8WXR4 1341 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 GTPBP6O43824 516 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-204ENST00000367248 ZNF75DP51815 510 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 SLC9C1Q4G0N8 1177 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 FAM26FQ5R3K3 315 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 KIAA1841Q6NSI8 718 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 KRBA2Q6ZNG9 492 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 CCDC155Q8N6L0 562 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 FOXP1Q9H334 677 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-204ENST00000367248 PCDHA4Q9UN74 947 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 A0A1W2PQ27 194 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 A0A1W2PQ64 194 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 A0A1W2PQD8 194 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 SLC39A14Q15043 492 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 ASIC2Q16515 512 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 SYT10Q6XYQ8 523 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 NRBP2Q9NSY0 501 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 MTUS1Q9ULD2 1270 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 NUB1Q9Y5A7 615 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 CDC42BPAQ5VT25 1732 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 H0YCG3 227 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 SPOPO43791 374 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 PRAMEF18Q5VWM3 479 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 CAPZA3Q96KX2 299 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 TMEM63CQ9P1W3 806 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 COL4A3BPQ9Y5P4 624 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.82□□□□□ -0.36
SYNE1-204ENST00000367248 PLEKHG2Q9H7P9 1386 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 SPATA31A1Q5TZJ5 1347 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 DIP2CQ9Y2E4 1556 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 CDK8P49336 464 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 LIG4P49917 911 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 POLIQ9UNA4 740 aa12.82□□□□□ -0.36
SYNE1-204ENST00000367248 SYNJ2BP-COX16A0A087WUM0 186 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 NECTIN1Q15223 517 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 LIN9Q5TKA1 542 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 PPP1R21Q6ZMI0 780 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 COX16Q9P0S2 106 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 TNNC1P63316 161 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 CYP26C1Q6V0L0 522 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 RASGRP4Q8TDF6 673 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 ARHGAP44Q17R89 818 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 TMTC1Q8IUR5 882 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 CLIC6Q96NY7 704 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.81□□□□□ -0.36
SYNE1-204ENST00000367248 GCFC2P16383 781 aaKnown RBP12.81□□□□□ -0.36
SYNE1-204ENST00000367248 MAGEA1P43355 309 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 PKP1Q13835 747 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 RIOK1Q9BRS2 568 aaKnown RBP12.81□□□□□ -0.36
SYNE1-204ENST00000367248 POLR3GO15318 223 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-204ENST00000367248 CYP2E1P05181 493 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms