RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 FBXO11Q86XK2 927 aa22.87■■□□□ 1.25
CLN3-205ENST00000359984 PPP1R9AQ9ULJ8 1098 aa22.87■■□□□ 1.25
CLN3-205ENST00000359984 PASKQ96RG2 1323 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 SMCO2A6NFE2 343 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 GALNT17Q6IS24 598 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 CATSPERGQ6ZRH7 1159 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 NOSTRINQ8IVI9 506 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 AMNQ9BXJ7 453 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 BRMS1Q9HCU9 246 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 PCDHA4Q9UN74 947 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 PCDHA1Q9Y5I3 950 aa22.86■■□□□ 1.25
CLN3-205ENST00000359984 ESYT2A0FGR8 921 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 MCM4P33991 863 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 PPP1R18Q6NYC8 613 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 BLIDQ8IZY5 108 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 DAGLBQ8NCG7 672 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 TNFRSF25Q93038 417 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 PTPRFP10586 1907 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L15C9J2P7 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L13C9JLJ4 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L11C9JVI0 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L18D6R9N7 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L22D6RA61 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L17D6RBQ6 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L19D6RCP7 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L20D6RJB6 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 USP17L24Q0WX57 530 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 TREML2Q5T2D2 321 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 CCDC174Q6PII3 467 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 GADL1Q6ZQY3 521 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 PROCA1Q8NCQ7 364 aaPredicted RBP22.85■■□□□ 1.25
CLN3-205ENST00000359984 C6orf50Q9HD87 102 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 CNPY2Q9Y2B0 182 aa22.85■■□□□ 1.25
CLN3-205ENST00000359984 SMC1BQ8NDV3 1235 aa22.84■■□□□ 1.25
CLN3-205ENST00000359984 WNK4Q96J92 1243 aa22.84■■□□□ 1.25
CLN3-205ENST00000359984 TFIP11Q9UBB9 837 aaKnown RBP22.84■■□□□ 1.25
CLN3-205ENST00000359984 TRPM7Q96QT4 1865 aa22.84■■□□□ 1.25
CLN3-205ENST00000359984 M0R2N6 131 aa22.83■■□□□ 1.25
CLN3-205ENST00000359984 TAL1P17542 331 aaPredicted RBP22.83■■□□□ 1.25
CLN3-205ENST00000359984 NCLP19338 710 aaKnown RBP22.83■■□□□ 1.25
CLN3-205ENST00000359984 GNA11P29992 359 aa22.83■■□□□ 1.25
CLN3-205ENST00000359984 MOGSQ13724 837 aa22.83■■□□□ 1.25
CLN3-205ENST00000359984 COG2Q14746 738 aa22.83■■□□□ 1.25
CLN3-205ENST00000359984 USH1GQ495M9 461 aa22.83■■□□□ 1.25
CLN3-205ENST00000359984 MYSM1Q5VVJ2 828 aa22.83■■□□□ 1.25
CLN3-205ENST00000359984 SLC38A10Q9HBR0 1119 aa22.83■■□□□ 1.25
CLN3-205ENST00000359984 DSG3P32926 999 aa22.83■■□□□ 1.24
CLN3-205ENST00000359984 HUNKP57058 714 aa22.83■■□□□ 1.24
CLN3-205ENST00000359984 SNAPC2Q13487 334 aa22.83■■□□□ 1.24
CLN3-205ENST00000359984 EARS2Q5JPH6 523 aaKnown RBP22.83■■□□□ 1.24
CLN3-205ENST00000359984 ATG4CQ96DT6 458 aa22.83■■□□□ 1.24
CLN3-205ENST00000359984 ADCY7P51828 1080 aa22.82■■□□□ 1.24
CLN3-205ENST00000359984 KRT85P78386 507 aa22.82■■□□□ 1.24
CLN3-205ENST00000359984 NOM1Q5C9Z4 860 aaKnown RBP22.82■■□□□ 1.24
CLN3-205ENST00000359984 GDPD2Q9HCC8 539 aa22.82■■□□□ 1.24
CLN3-205ENST00000359984 RIC8AQ9NPQ8 531 aa22.82■■□□□ 1.24
CLN3-205ENST00000359984 ZNF536O15090 1300 aa22.82■■□□□ 1.24
CLN3-205ENST00000359984 FAM205CA6NFA0 338 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 VWA5AO00534 786 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 RASGRP4Q8TDF6 673 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 ZNF396Q96N95 335 aaPredicted RBP22.81■■□□□ 1.24
CLN3-205ENST00000359984 PCDHA6Q9UN73 950 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 ADAMTS5Q9UNA0 930 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 PCDHA8Q9Y5H6 950 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 LOC285556D6RIA3 1793 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 ZBED4O75132 1171 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 ICAM1P05362 532 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 FDX1P10109 184 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 HOXA7P31268 230 aaPredicted RBP22.81■■□□□ 1.24
CLN3-205ENST00000359984 TRAF1Q13077 416 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 ATL3Q6DD88 541 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 FASTKD5Q7L8L6 764 aaKnown RBP22.81■■□□□ 1.24
CLN3-205ENST00000359984 FTOQ9C0B1 505 aaKnown RBP eCLIP22.81■■□□□ 1.24
CLN3-205ENST00000359984 PSTPIP2Q9H939 334 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 AGTPBP1Q9UPW5 1226 aa22.81■■□□□ 1.24
CLN3-205ENST00000359984 RLFQ13129 1914 aa22.8■■□□□ 1.24
CLN3-205ENST00000359984 SPRYD7Q5W111 196 aa22.8■■□□□ 1.24
CLN3-205ENST00000359984 BICD2Q8TD16 824 aa22.8■■□□□ 1.24
CLN3-205ENST00000359984 AGBL1Q96MI9 1066 aa22.8■■□□□ 1.24
CLN3-205ENST00000359984 USP28Q96RU2 1077 aa22.8■■□□□ 1.24
CLN3-205ENST00000359984 HOXC10Q9NYD6 342 aa22.8■■□□□ 1.24
CLN3-205ENST00000359984 MYPNQ86TC9 1320 aa22.8■■□□□ 1.24
CLN3-205ENST00000359984 PARP14Q460N5 1801 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 FIBPO43427 364 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 TOMM70O94826 608 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 MKRN3Q13064 507 aaKnown RBP22.79■■□□□ 1.24
CLN3-205ENST00000359984 CUL5Q93034 780 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 MS4A4AQ96JQ5 239 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 RAVER2Q9HCJ3 691 aaKnown RBP22.79■■□□□ 1.24
CLN3-205ENST00000359984 CFAP45Q9UL16 551 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 TCHHQ07283 1943 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 SPDYE16A6NNV3 312 aaPredicted RBP22.79■■□□□ 1.24
CLN3-205ENST00000359984 TOB1P50616 345 aaPredicted RBP22.79■■□□□ 1.24
CLN3-205ENST00000359984 MRPL12P52815 198 aaKnown RBP22.79■■□□□ 1.24
CLN3-205ENST00000359984 GPAT2Q6NUI2 795 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 PIK3AP1Q6ZUJ8 805 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 SAPCD2Q86UD0 394 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 CPXCR1Q8N123 301 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 REXO1Q8N1G1 1221 aaKnown RBP22.79■■□□□ 1.24
CLN3-205ENST00000359984 REPS2Q8NFH8 660 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms