RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 CCL14Q16627 93 aa19.82■□□□□ 0.76
CLN3-203ENST00000357806 IGDCC4Q8TDY8 1250 aa19.82■□□□□ 0.76
CLN3-203ENST00000357806 NEK1Q96PY6 1258 aa19.82■□□□□ 0.76
CLN3-203ENST00000357806 BAZ2BQ9UIF8 2168 aaKnown RBP19.81■□□□□ 0.76
CLN3-203ENST00000357806 ICAM1P05362 532 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 SNAP25P60880 206 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 TKFCQ3LXA3 575 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-203ENST00000357806 RASEFQ8IZ41 740 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 NPLOC4Q8TAT6 608 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 AGBL1Q96MI9 1066 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 LY9Q9HBG7 655 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 HOMER2Q9NSB8 354 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 CCPG1Q9ULG6 757 aa19.81■□□□□ 0.76
CLN3-203ENST00000357806 WDR19Q8NEZ3 1342 aa19.8■□□□□ 0.76
CLN3-203ENST00000357806 CATIPQ7Z7H3 387 aa19.8■□□□□ 0.76
CLN3-203ENST00000357806 RNF208Q9H0X6 261 aa19.8■□□□□ 0.76
CLN3-203ENST00000357806 ACAD9Q9H845 621 aa19.8■□□□□ 0.76
CLN3-203ENST00000357806 SENP2Q9HC62 589 aa19.8■□□□□ 0.76
CLN3-203ENST00000357806 RNF146Q9NTX7 359 aa19.8■□□□□ 0.76
CLN3-203ENST00000357806 PNMA2Q9UL42 364 aa19.8■□□□□ 0.76
CLN3-203ENST00000357806 POTEFA5A3E0 1075 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 SH2B2O14492 632 aaPredicted RBP19.79■□□□□ 0.76
CLN3-203ENST00000357806 COBLO75128 1261 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 ALAS1P13196 640 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 ADCK5Q3MIX3 580 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 TMTC2Q8N394 836 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 KCNB2Q92953 911 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 UBA5Q9GZZ9 404 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 UNC93B1Q9H1C4 597 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 LRRC37A2A6NM11 1700 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 RPTORQ8N122 1335 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 CCDC69A6NI79 296 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 DHX16O60231 1041 aaKnown RBP19.79■□□□□ 0.76
CLN3-203ENST00000357806 HMGB1P09429 215 aaKnown RBP19.79■□□□□ 0.76
CLN3-203ENST00000357806 PRKAR2AP13861 404 aaKnown RBP19.79■□□□□ 0.76
CLN3-203ENST00000357806 LIFRP42702 1097 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 TROAPQ12815 778 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 TRIM32Q13049 653 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 COL9A3Q14050 684 aaPredicted RBP19.79■□□□□ 0.76
CLN3-203ENST00000357806 GRM4Q14833 912 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 MAP3K21Q5TCX8 1036 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 MFSD14CQ5VZR4 134 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 OLFML2BQ68BL8 750 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 NFXL1Q6ZNB6 911 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 ZNF654Q8IZM8 581 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 ANKRD35Q8N283 1001 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 DDX11Q96FC9 970 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 TRERF1Q96PN7 1200 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 CPVLQ9H3G5 476 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 HMX1Q9NP08 348 aaPredicted RBP19.79■□□□□ 0.76
CLN3-203ENST00000357806 FLRT1Q9NZU1 646 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 MAD2L2Q9UI95 211 aa19.79■□□□□ 0.76
CLN3-203ENST00000357806 DDAH1O94760 285 aa19.78■□□□□ 0.76
CLN3-203ENST00000357806 PGK2P07205 417 aa19.78■□□□□ 0.76
CLN3-203ENST00000357806 CDC37Q16543 378 aaPredicted RBP19.78■□□□□ 0.76
CLN3-203ENST00000357806 DHX32Q7L7V1 743 aaKnown RBP19.78■□□□□ 0.76
CLN3-203ENST00000357806 ADGRF4Q8IZF3 695 aa19.78■□□□□ 0.76
CLN3-203ENST00000357806 STAG2Q8N3U4 1231 aa19.78■□□□□ 0.76
CLN3-203ENST00000357806 MAML3Q96JK9 1138 aa19.78■□□□□ 0.76
CLN3-203ENST00000357806 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-203ENST00000357806 DIS3Q9Y2L1 958 aaKnown RBP19.78■□□□□ 0.76
CLN3-203ENST00000357806 SNX14Q9Y5W7 946 aa19.78■□□□□ 0.76
CLN3-203ENST00000357806 PFASO15067 1338 aa19.77■□□□□ 0.76
CLN3-203ENST00000357806 PALM3A6NDB9 673 aaPredicted RBP19.77■□□□□ 0.76
CLN3-203ENST00000357806 KLRF2D3W0D1 207 aa19.77■□□□□ 0.76
CLN3-203ENST00000357806 GJB1P08034 283 aa19.77■□□□□ 0.76
CLN3-203ENST00000357806 RGS19P49795 217 aa19.77■□□□□ 0.76
CLN3-203ENST00000357806 CACNB2Q08289 660 aaPredicted RBP19.77■□□□□ 0.76
CLN3-203ENST00000357806 ZNF792Q3KQV3 632 aa19.77■□□□□ 0.76
CLN3-203ENST00000357806 NUP133Q8WUM0 1156 aa19.77■□□□□ 0.76
CLN3-203ENST00000357806 MAP3K14Q99558 947 aa19.77■□□□□ 0.76
CLN3-203ENST00000357806 LRRC2Q9BYS8 371 aa19.77■□□□□ 0.76
CLN3-203ENST00000357806 PAK6Q9NQU5 681 aaPredicted RBP19.77■□□□□ 0.76
CLN3-203ENST00000357806 GPHNQ9NQX3 736 aaPredicted RBP19.77■□□□□ 0.76
CLN3-203ENST00000357806 DNAJC25-GNG10A0A024R161 153 aa19.76■□□□□ 0.75
CLN3-203ENST00000357806 EIF5BO60841 1220 aaKnown RBP19.76■□□□□ 0.75
CLN3-203ENST00000357806 CTCFLQ8NI51 663 aaPredicted RBP19.76■□□□□ 0.75
CLN3-203ENST00000357806 JAKMIP1Q96N16 626 aaKnown RBP19.76■□□□□ 0.75
CLN3-203ENST00000357806 USP26Q9BXU7 913 aa19.76■□□□□ 0.75
CLN3-203ENST00000357806 CALM1P0DP23 149 aa19.75■□□□□ 0.75
CLN3-203ENST00000357806 CALM2P0DP24 149 aa19.75■□□□□ 0.75
CLN3-203ENST00000357806 CALM3P0DP25 149 aa19.75■□□□□ 0.75
CLN3-203ENST00000357806 GJA8P48165 433 aa19.75■□□□□ 0.75
CLN3-203ENST00000357806 SGMS1Q86VZ5 419 aa19.75■□□□□ 0.75
CLN3-203ENST00000357806 A1CFQ9NQ94 594 aaKnown RBP19.75■□□□□ 0.75
CLN3-203ENST00000357806 SLC12A7Q9Y666 1083 aa19.75■□□□□ 0.75
CLN3-203ENST00000357806 IGHA2P01877 340 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 TAL1P17542 331 aaPredicted RBP19.74■□□□□ 0.75
CLN3-203ENST00000357806 EN2P19622 333 aaPredicted RBP19.74■□□□□ 0.75
CLN3-203ENST00000357806 PSMA5P28066 241 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 KIF5BP33176 963 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 CYP2C19P33261 490 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 EXOSC10Q01780 885 aaKnown RBP19.74■□□□□ 0.75
CLN3-203ENST00000357806 MUM1L1Q5H9M0 696 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 BLOC1S2Q6QNY1 142 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 U2AF1L4Q8WU68 220 aaKnown RBP19.74■□□□□ 0.75
CLN3-203ENST00000357806 TCEANC2Q96MN5 208 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 DEFB118Q96PH6 123 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 MYL10Q9BUA6 226 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms