RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 USP17L17D6RBQ6 530 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP17L19D6RCP7 530 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP17L20D6RJB6 530 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 NFIBO00712 420 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP14P54578 494 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP17L24Q0WX57 530 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 NOGQ13253 232 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 SYDE2Q5VT97 1194 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 WWC2Q6AWC2 1192 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 PRPF38AQ8NAV1 312 aaKnown RBP4.68□□□□□ -1.66
LIG4-201ENST00000356922 ZFP91Q96JP5 570 aaPredicted RBP4.68□□□□□ -1.66
LIG4-201ENST00000356922 SLF1Q9BQI6 1058 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 PAGR1Q9BTK6 254 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 EFCC1Q9HA90 598 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 HOMER2Q9NSB8 354 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 TMOD4Q9NZQ9 345 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 DAXXQ9UER7 740 aaPredicted RBP4.68□□□□□ -1.66
LIG4-201ENST00000356922 KCNJ14Q9UNX9 436 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 NID2Q14112 1375 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 ASTN1O14525 1302 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 ADGRA2Q96PE1 1338 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 WNT7AO00755 349 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 IKQ13123 557 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 CDC37Q16543 378 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 C17orf99Q6UX52 265 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 FASTKD5Q7L8L6 764 aaKnown RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 ANKRD23Q86SG2 305 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 CTCFLQ8NI51 663 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 OXER1Q8TDS5 423 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 CLEC4DQ8WXI8 215 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 RANBP17Q9H2T7 1088 aaKnown RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 VPS54Q9P1Q0 977 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 ZDHHC9Q9Y397 364 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 EYSQ5T1H1 3165 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 FAM205CA6NFA0 338 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 EIF5BO60841 1220 aaKnown RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 ANKRD1Q15327 319 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 ASPRV1Q53RT3 343 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 CCDC178Q5BJE1 867 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 GPATCH4Q5T3I0 446 aaKnown RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 RASGRP4Q8TDF6 673 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 MAP3K14Q99558 947 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 COL20A1Q9P218 1284 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 MANSC4A6NHS7 340 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 DHX16O60231 1041 aaKnown RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 TLR2O60603 784 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 FMNL1O95466 1100 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 BCRP11274 1271 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 PTGS1P23219 599 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 GJB2P29033 226 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 PLS1Q14651 629 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 TAF1CQ15572 869 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 FAM173BQ6P4H8 233 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 USP17L6PQ6QN14 398 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 SYNE3Q6ZMZ3 975 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 PGBD1Q96JS3 809 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 SPZ1Q9BXG8 430 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 MOV10L1Q9BXT6 1211 aaKnown RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 FEM1BQ9UK73 627 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 SYNPO2Q9UMS6 1093 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 TNRC18O15417 2968 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 ZBTB5O15062 677 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 PRPF3O43395 683 aaKnown RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 PLA2G6O60733 806 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 HOXA13P31271 388 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 DDIT3P35638 169 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 SH2D4AQ9H788 454 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 TMEM260Q9NX78 707 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 HOXC10Q9NYD6 342 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 ORC3Q9UBD5 711 aaPredicted RBP4.67□□□□□ -1.66
LIG4-201ENST00000356922 PCDHA1Q9Y5I3 950 aa4.67□□□□□ -1.66
LIG4-201ENST00000356922 KIF28PB7ZC32 967 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 STXBP3O00186 592 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 MEIS2O14770 477 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 PGK2P07205 417 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 ERCC3P19447 782 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 MAP2K2P36507 400 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 STAT3P40763 770 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 NT5C2P49902 561 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 IRX3P78415 501 aaPredicted RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 NR5A1Q13285 461 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 UBE2SQ16763 222 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 PFKFB3Q16875 520 aaPredicted RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 TMEM63BQ5T3F8 832 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 FOXD4L5Q5VV16 416 aaPredicted RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 SNRNP48Q6IEG0 339 aaKnown RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 FOXD4L4Q8WXT5 416 aaPredicted RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 SPATC1LQ9H0A9 340 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 WBP1LQ9NX94 342 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 PNMA6FA0A0J9YX94 578 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 CPLX1O14810 134 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 CA12O43570 354 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 CALM1P0DP23 149 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 CALM2P0DP24 149 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 CALM3P0DP25 149 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 ALAS1P13196 640 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 KIF5BP33176 963 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 RCAN1P53805 252 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 ERVK-9P63128 1117 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 ERVK-24P63145 666 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms