RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 USP33Q8TEY7 942 aa2.16□□□□□ -2.06
BRCA1-202ENST00000354071 MRGPRX3Q96LB0 322 aa2.16□□□□□ -2.06
BRCA1-202ENST00000354071 PPCSQ9HAB8 311 aa2.16□□□□□ -2.06
BRCA1-202ENST00000354071 CGGBP1Q9UFW8 167 aaPredicted RBP2.16□□□□□ -2.06
BRCA1-202ENST00000354071 APAF1O14727 1248 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 DYNC1LI2O43237 492 aaPredicted RBP2.15□□□□□ -2.06
BRCA1-202ENST00000354071 RGS9O75916 674 aaPredicted RBP2.15□□□□□ -2.06
BRCA1-202ENST00000354071 ABLIM3O94929 683 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 MYBL2P10244 700 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 CD247P20963 164 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 ECI1P42126 302 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 TRAPPC10P48553 1259 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 ZNF445P59923 1031 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 GRM3Q14832 879 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 KIF4BQ2VIQ3 1234 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 FNDC3BQ53EP0 1204 aaKnown RBP2.15□□□□□ -2.06
BRCA1-202ENST00000354071 USP53Q70EK8 1073 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 SYNPOQ8N3V7 929 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 ZDHHC15Q96MV8 337 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 AP4E1Q9UPM8 1137 aa2.15□□□□□ -2.06
BRCA1-202ENST00000354071 WDR64B1ANS9 1081 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 M0R082 166 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 RGS13O14921 159 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 CHRNA4P43681 627 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 HTRA3P83110 453 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 HSP90AA2PQ14568 343 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 CFAP100Q494V2 611 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 SYDE2Q5VT97 1194 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 WWC2Q6AWC2 1192 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 ZBTB46Q86UZ6 589 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 SCUBE1Q8IWY4 988 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 MAGEB6Q8N7X4 407 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 BVESQ8NE79 360 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 ZNF417Q8TAU3 575 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 FANCD2OSQ96PS1 177 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 ZNF587Q96SQ5 575 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 KRTAP9-2Q9BYQ4 174 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PICK1Q9NRD5 415 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 FAM105AQ9NUU6 356 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 MAGEC2Q9UBF1 373 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PPARGC1AQ9UBK2 798 aaKnown RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 FBXL7Q9UJT9 491 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 SNCAIPQ9Y6H5 919 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 FER1L4A9Z1Z3 1794 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 A6NNZ2 444 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 STXBP3O00186 592 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PCDHGA12O60330 932 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 CLEC3AO75596 197 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 IGHA1P01876 353 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 CYP11A1P05108 521 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 KRT18P05783 430 aaKnown RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 SRGAP2CP0DJJ0 459 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 ADH6P28332 368 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 GBP1P32455 592 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 KCNJ6P48051 423 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 GFRA1P56159 465 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 ZNF267Q14586 743 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 LONRF2Q1L5Z9 754 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 TRIM61Q5EBN2 209 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 CDCA2Q69YH5 1023 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 GTF2IRD2BQ6EKJ0 949 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 SEZ6L2Q6UXD5 910 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 EPM2AIP1Q7L775 607 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 TMC3Q7Z5M5 1100 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 GTF2IRD2Q86UP8 949 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 DMRTC2Q8IXT2 367 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 DZIP1LQ8IYY4 767 aaKnown RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 AGGF1Q8N302 714 aaeCLIP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 IGSF22Q8N9C0 903 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 ISL2Q96A47 359 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 ZNF669Q96BR6 464 aaPredicted RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 GP6Q9HCN6 339 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 AKT3Q9Y243 479 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PCDHGA9Q9Y5G4 932 aaKnown RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PCDHGA8Q9Y5G5 932 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PCDHGA7Q9Y5G6 932 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PCDHGA6Q9Y5G7 932 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PCDHGA3Q9Y5H0 932 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PCDHGA2Q9Y5H1 932 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PF4V1P10720 104 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 FGFR1P11362 822 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 MX2P20592 715 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 PMLP29590 882 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 GRIK1P39086 918 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 CABP4P57796 275 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 DHX8Q14562 1220 aaKnown RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 TAF7LQ5H9L4 462 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 NKAPLQ5M9Q1 402 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 FAM102BQ5T8I3 360 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 CDH24Q86UP0 819 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 CLRN3Q8NCR9 226 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 THG1LQ9NWX6 298 aaKnown RBP2.15□□□□□ -2.07
BRCA1-202ENST00000354071 EMC9Q9Y3B6 208 aa2.15□□□□□ -2.07
BRCA1-202ENST00000354071 SHISA3A0PJX4 238 aa2.14□□□□□ -2.07
BRCA1-202ENST00000354071 H0Y8X5 98 aa2.14□□□□□ -2.07
BRCA1-202ENST00000354071 TRAF5O00463 557 aa2.14□□□□□ -2.07
BRCA1-202ENST00000354071 ERVK-21P61565 698 aa2.14□□□□□ -2.07
BRCA1-202ENST00000354071 PDE4BQ07343 736 aa2.14□□□□□ -2.07
BRCA1-202ENST00000354071 GRB10Q13322 594 aa2.14□□□□□ -2.07
BRCA1-202ENST00000354071 AUHQ13825 339 aaKnown RBP2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms