RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PHF7Q9BWX1 381 aaPredicted RBP2.09□□□□□ -2.08
LINC00643-201ENST00000334389 S1PR5Q9H228 398 aa2.09□□□□□ -2.08
LINC00643-201ENST00000334389 DHX36Q9H2U1 1008 aaKnown RBP2.09□□□□□ -2.08
LINC00643-201ENST00000334389 GPR108Q9NPR9 543 aa2.09□□□□□ -2.08
LINC00643-201ENST00000334389 MBIPQ9NS73 344 aa2.09□□□□□ -2.08
LINC00643-201ENST00000334389 CUEDC1Q9NWM3 386 aaPredicted RBP2.09□□□□□ -2.08
LINC00643-201ENST00000334389 HSFX1Q9UBD0 423 aa2.09□□□□□ -2.08
LINC00643-201ENST00000334389 GGA1Q9UJY5 639 aa2.09□□□□□ -2.08
LINC00643-201ENST00000334389 DUSP12Q9UNI6 340 aa2.09□□□□□ -2.08
LINC00643-201ENST00000334389 COL1A2P08123 1366 aa2.09□□□□□ -2.08
LINC00643-201ENST00000334389 WDR19Q8NEZ3 1342 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 CHURC1-FNTBB4DL54 471 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 DXOO77932 396 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 LMNAP02545 664 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 C8AP07357 584 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 MTHFRP42898 656 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 SKOR1P84550 965 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 PLCB3Q01970 1234 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 KIAA1841Q6NSI8 718 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L2Q6R6M4 530 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 DGLUCYQ7Z3D6 616 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 DNAJC10Q8IXB1 793 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 SMRP1Q8NCR6 262 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 SNIP1Q8TAD8 396 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 BAHD1Q8TBE0 780 aaPredicted RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 KCNV2Q8TDN2 545 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 NUP133Q8WUM0 1156 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 RSAD2Q8WXG1 361 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 GMCL1Q96IK5 515 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 TBATAQ96M53 351 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 FSD1Q9BTV5 496 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 KIAA1683Q9H0B3 1180 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 UNC93B1Q9H1C4 597 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ADNPQ9H2P0 1102 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 LGR6Q9HBX8 967 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 RAI2Q9Y5P3 530 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 VWA8A3KMH1 1905 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 TP53BP1Q12888 1972 aaPredicted RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ST20-MTHFSA0A0A6YYL1 179 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ERVH48-1M5A8F1 160 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ARVCFO00192 962 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 TRAF5O00463 557 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 RETP07949 1114 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 VSIG8P0DPA2 414 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ITGA3P26006 1051 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 MTHFSP49914 203 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 RHDQ02161 417 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 RAD51AP2Q09MP3 1159 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 NOLC1Q14978 699 aaKnown RBP eCLIP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF423Q2M1K9 1284 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 CXXC5Q7LFL8 322 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 HERC6Q8IVU3 1022 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 SUGP1Q8IWZ8 645 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 FBXO22Q8NEZ5 403 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 VN1R2Q8NFZ6 395 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 E2F7Q96AV8 911 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 OPTNQ96CV9 577 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 TSPAN18Q96SJ8 248 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 IL21Q9HBE4 155 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 USP29Q9HBJ7 922 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF277Q9NRM2 450 aaPredicted RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 PTPRDP23468 1912 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 NBPF26B4DH59 902 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 SOX12O15370 315 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 NCAM2O15394 837 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 SHOX2O60902 331 aaPredicted RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ZKSCAN1P17029 563 aaPredicted RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 EIF4A1P60842 406 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ILKQ13418 452 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 KARSQ15046 597 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 E2F5Q15329 346 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 PCBP1Q15365 356 aaKnown RBP eCLIP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 NFE2L2Q16236 605 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 WASHC4Q2M389 1173 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 TRIM71Q2Q1W2 868 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ODR4Q5SWX8 454 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 FAM182BQ5T319 152 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 AGMOQ6ZNB7 445 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 DDX46Q7L014 1031 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 TMC6Q7Z403 805 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ZSCAN30Q86W11 494 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 LURAP1LQ8IV03 231 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 DTWD2Q8NBA8 298 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 SH3TC2Q8TF17 1288 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 HDAC11Q96DB2 347 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 LRCH3Q96II8 777 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 ZSCAN32Q9NX65 697 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 SRP68Q9UHB9 627 aaKnown RBP2.08□□□□□ -2.08
LINC00643-201ENST00000334389 KCNH3Q9ULD8 1083 aa2.08□□□□□ -2.08
LINC00643-201ENST00000334389 EML5Q05BV3 1969 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 C2orf16Q68DN1 1984 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CHD5Q8TDI0 1954 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 TCF20Q9UGU0 1960 aaKnown RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CCL15-CCL14A0A0B4J2E2 113 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 LCHNA4D1U4 455 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 HAS3O00219 553 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 CTAGE5O15320 804 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 RAP1GAPP47736 663 aa2.07□□□□□ -2.08
LINC00643-201ENST00000334389 VASPP50552 380 aaPredicted RBP2.07□□□□□ -2.08
LINC00643-201ENST00000334389 TAF1CQ15572 869 aaPredicted RBP2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms