RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 NOB1Q9ULX3 412 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 MCM3APO60318 1980 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 PTGS1P23219 599 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SMARCA1P28370 1054 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CASP14P31944 242 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 GNGT1P63211 74 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 STK3Q13188 491 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 IKBIPQ70UQ0 350 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 PABPN1Q86U42 306 aaKnown RBP eCLIP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CCDC125Q86Z20 511 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CRACR2BQ8N4Y2 399 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 FANCEQ9HB96 536 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 WBP11Q9Y2W2 641 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 NCOA2Q15596 1464 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 WDR91A4D1P6 747 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CAPN9O14815 690 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CBFA2T3O75081 653 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 RHOBTB1O94844 696 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 MAP3K12Q12852 859 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CDKL2Q92772 493 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ZSWIM4Q9H7M6 989 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 UBAP1Q9NZ09 502 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 MYO5CQ9NQX4 1742 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 UBN2Q6ZU65 1347 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 TMEM259Q4ZIN3 620 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 PASD1Q8IV76 773 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ZKSCAN3Q9BRR0 538 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 KLC4Q9NSK0 619 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CEP126Q9P2H0 1117 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 DIS3Q9Y2L1 958 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 POLR3AO14802 1390 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SYNRGQ9UMZ2 1314 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ERCC6Q03468 1493 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 TRPA1O75762 1119 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CDH2P19022 906 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 FSCBQ5H9T9 825 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 PRR23BQ6ZRT6 265 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 TRIM11Q96F44 468 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 PHACTR3Q96KR7 559 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CUL9Q8IWT3 2517 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ATICP31939 592 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 MFN1Q8IWA4 741 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 LRRC59Q96AG4 307 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SIKE1Q9BRV8 207 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CDC23Q9UJX2 597 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CAB39Q9Y376 341 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 MINK1Q8N4C8 1332 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 KDM2BQ8NHM5 1336 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 TRIM75PA6NK02 468 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 MSL3P1P0C860 447 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 IFNA8P32881 189 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SF3A3Q12874 501 aaKnown RBP eCLIP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 DCTN2Q13561 401 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ZBED2Q9BTP6 218 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ZNF692Q9BU19 519 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 LZTFL1Q9NQ48 299 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 HELLSQ9NRZ9 838 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ANKRD50Q9ULJ7 1429 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 CNGA3Q16281 694 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 HDGFL1Q5TGJ6 251 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 TUBA3EQ6PEY2 450 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 LRRC8AQ8IWT6 810 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 NCOA7Q8NI08 942 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 STOML2Q9UJZ1 356 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 RRP7AQ9Y3A4 280 aaKnown RBP5.27□□□□□ -1.57
CSMD3-201ENST00000297405 PDS5BQ9NTI5 1447 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 ZNF213O14771 459 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 SNAP25P60880 206 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 SPATA1Q5VX52 437 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 SDK1Q7Z5N4 2213 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 SCN5AQ14524 2016 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 ATXN2Q99700 1313 aaKnown RBP5.27□□□□□ -1.57
CSMD3-201ENST00000297405 PODXLO00592 558 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 PSMA3P25788 255 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 PURAQ00577 322 aaKnown RBP5.27□□□□□ -1.57
CSMD3-201ENST00000297405 RRAGBQ5VZM2 374 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 AOPEPQ8N6M6 819 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 CCDC28BQ9BUN5 200 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 ING2Q9H160 280 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 DDX21Q9NR30 783 aaKnown RBP eCLIP5.27□□□□□ -1.57
CSMD3-201ENST00000297405 ADAM21Q9UKJ8 722 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 PITPNM2Q9BZ72 1349 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 ACTN1P12814 892 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 DNM2P50570 870 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 MPRIPQ6WCQ1 1025 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 PEX26Q7Z412 305 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 ATP8B4Q8TF62 1192 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 DACT3Q96B18 629 aaPredicted RBP5.27□□□□□ -1.57
CSMD3-201ENST00000297405 DACT1Q9NYF0 836 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 ZRANB1Q9UGI0 708 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 PNMA8CA0A1B0GUJ8 204 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 TTKP33981 857 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 TBCCQ15814 346 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 UNC45AQ9H3U1 944 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 MYO5BQ9ULV0 1848 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 AXIN1O15169 862 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 SLC12A2P55011 1212 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 TRMT10CQ7L0Y3 403 aaKnown RBP5.27□□□□□ -1.57
CSMD3-201ENST00000297405 IFNKQ9P0W0 207 aa5.27□□□□□ -1.57
CSMD3-201ENST00000297405 ARIH1Q9Y4X5 557 aaPredicted RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms