RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 A0A087X0B3 334 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 PLEKHG3A1L390 1219 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 RANBP6O60518 1105 aaKnown RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 PRDM1O75626 825 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 PARP1P09874 1014 aaKnown RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 SKOR1P84550 965 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 TRADDQ15628 312 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 ANKRD13DQ6ZTN6 518 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 ZNF483Q8TF39 744 aaPredicted RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 SEC16BQ96JE7 1060 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 SPAG5Q96R06 1193 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 OSBPL9Q96SU4 736 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 OSBPL7Q9BZF2 842 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 COPRSQ9NQ92 184 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 FAM207AQ9NSI2 230 aaPredicted RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 SNX12Q9UMY4 172 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 A2ML1A8K2U0 1454 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 NUTM2BA6NNL0 878 aaPredicted RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 NUTM2EB1AL46 878 aaPredicted RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 GLI1P08151 1106 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 CDKAL1Q5VV42 579 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 KDM7AQ6ZMT4 941 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 FAM228AQ86W67 206 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 MMRN2Q9H8L6 949 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 CEP126Q9P2H0 1117 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 G3BP2Q9UN86 482 aaKnown RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 PACSIN2Q9UNF0 486 aaPredicted RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 NOVA2Q9UNW9 492 aaKnown RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 ABCC6O95255 1503 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 MYH8P13535 1937 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 PPP1R3GB7ZBB8 358 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 SARSP49591 514 aaKnown RBP11.3□□□□□ -0.6
CLDN1-201ENST00000295522 ARID5AQ03989 594 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 CUL4BQ13620 913 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 ANKRD20A8PQ5CZ79 823 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 CCDC170Q8IYT3 715 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 TRIM58Q8NG06 486 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 TRIM31Q9BZY9 425 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 GOPCQ9HD26 462 aa11.3□□□□□ -0.6
CLDN1-201ENST00000295522 PBX1P40424 430 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 MRPL12P52815 198 aaKnown RBP11.29□□□□□ -0.6
CLDN1-201ENST00000295522 ZC3H6P61129 1189 aaKnown RBP11.29□□□□□ -0.6
CLDN1-201ENST00000295522 HAUS3Q68CZ6 603 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 TMC4Q7Z404 712 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 WASF1Q92558 559 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 ATP6V0A4Q9HBG4 840 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 HYOU1Q9Y4L1 999 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 ERICH2A1L162 156 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 ANP32DO95626 131 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 FTCDO95954 541 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 CTDSPL2Q05D32 466 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 KRT71Q3SY84 523 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 WLSQ5T9L3 541 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 CREG2Q8IUH2 290 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 XRN1Q8IZH2 1706 aaKnown RBP11.29□□□□□ -0.6
CLDN1-201ENST00000295522 TANGO6Q9C0B7 1094 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 DDX21Q9NR30 783 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLDN1-201ENST00000295522 NRKQ7Z2Y5 1582 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 VIMP08670 466 aaKnown RBP11.29□□□□□ -0.6
CLDN1-201ENST00000295522 ZAP70P43403 619 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 RTN1Q16799 776 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 TBC1D10CQ8IV04 446 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 MB21D1Q8N884 522 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 XAGE2Q96GT9 111 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 NLRP3Q96P20 1036 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 CD2APQ9Y5K6 639 aa11.29□□□□□ -0.6
CLDN1-201ENST00000295522 MMP1P03956 469 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 ADORA1P30542 326 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 MCM7P33993 719 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 IFNAR2P48551 515 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 RASSF7Q02833 373 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 MDM1Q8TC05 714 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 LEMD3Q9Y2U8 911 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 SRPRBQ9Y5M8 271 aaKnown RBP11.28□□□□□ -0.6
CLDN1-201ENST00000295522 SLC4A4Q9Y6R1 1079 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 JCADQ9P266 1359 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 USP6P35125 1406 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 ATP6V1G2O95670 118 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 HOXB7P09629 217 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 MAGEA1P43355 309 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 CFAP221Q4G0U5 840 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 DDX42Q86XP3 938 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLDN1-201ENST00000295522 NKX2-3Q8TAU0 364 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 CUL5Q93034 780 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 GSDMAQ96QA5 445 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 PUS3Q9BZE2 481 aaKnown RBP11.28□□□□□ -0.6
CLDN1-201ENST00000295522 NLRP2Q9NX02 1062 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 CTNND1O60716 968 aaKnown RBP11.28□□□□□ -0.6
CLDN1-201ENST00000295522 KCNA6P17658 529 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 FNBP4Q8N3X1 1017 aaPredicted RBP11.28□□□□□ -0.6
CLDN1-201ENST00000295522 ANKS4BQ8N8V4 417 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLDN1-201ENST00000295522 ZCWPW1Q9H0M4 648 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 BABAM1Q9NWV8 329 aa11.28□□□□□ -0.6
CLDN1-201ENST00000295522 CHD2O14647 1828 aaKnown RBP11.27□□□□□ -0.6
CLDN1-201ENST00000295522 SMIM24O75264 130 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 PRCPP42785 496 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 MAGOHP61326 146 aaKnown RBP11.27□□□□□ -0.61
CLDN1-201ENST00000295522 CSGALNACT2Q8N6G5 542 aa11.27□□□□□ -0.61
CLDN1-201ENST00000295522 UHMK1Q8TAS1 419 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms