RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 CWF19L2Q2TBE0 894 aaKnown RBP4.76□□□□□ -1.65
VPS13C-202ENST00000261517 CCDC93Q567U6 631 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 ANKRD35Q8N283 1001 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 FANCBQ8NB91 859 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 CEP63Q96MT8 703 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 C3P01024 1663 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 LTKP29376 864 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 PDE4DQ08499 809 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 MYSM1Q5VVJ2 828 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 XRRA1Q6P2D8 792 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 APOBEC3FQ8IUX4 373 aaKnown RBP4.76□□□□□ -1.65
VPS13C-202ENST00000261517 MAP7D3Q8IWC1 876 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 TRIM6Q9C030 488 aaPredicted RBP4.76□□□□□ -1.65
VPS13C-202ENST00000261517 VPS33BQ9H267 617 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 PI4KBQ9UBF8 816 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 MID2Q9UJV3 735 aa4.76□□□□□ -1.65
VPS13C-202ENST00000261517 ZNF215Q9UL58 517 aaPredicted RBP4.76□□□□□ -1.65
VPS13C-202ENST00000261517 PPP1R7Q15435 360 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TSGA10IPQ3SY00 556 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 FBXO11Q86XK2 927 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 RAB11FIP4Q86YS3 637 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TCP11Q8WWU5 503 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 SECISBP2LQ93073 1101 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PPEF1O14829 653 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PRPF3O43395 683 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 BUB1BO60566 1050 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 SRGAP2BP0DMP2 458 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 IREB2P48200 963 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 YARSP54577 528 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CCDC122Q5T0U0 273 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 MIS18BP1Q6P0N0 1132 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CCDC121Q6ZUS5 278 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 OR8K1Q8NGG5 319 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 C16orf45Q96MC5 204 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 NACC1Q96RE7 527 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 FAM129AQ9BZQ8 928 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TFIP11Q9UBB9 837 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TKFCQ3LXA3 575 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 VWA3AA6NCI4 1184 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PRPF4BQ13523 1007 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 FAM204AQ9H8W3 233 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 KIAA1468Q9P260 1216 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PCDHA4Q9UN74 947 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CUL4AQ13619 759 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 SPATA1Q5VX52 437 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 KRT40Q6A162 431 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 FBXO18Q8NFZ0 1043 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TNNC2P02585 160 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CCND2P30279 289 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PRIM1P49642 420 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 ZNF75DP51815 510 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CERKLQ49MI3 558 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CABP7Q86V35 215 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TSC1Q92574 1164 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TUBB6Q9BUF5 446 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 INO80BQ9C086 356 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 JRKLQ9Y4A0 524 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PPME1Q9Y570 386 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 GIPC1O14908 333 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CRKLP46109 303 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 SULF1Q8IWU6 871 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 IFNL3Q8IZI9 196 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TSPYL6Q8N831 410 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 SNX29Q8TEQ0 813 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 HERC5Q9UII4 1024 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 UBE4BO95155 1302 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 LDHAP00338 332 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 GNAT1P11488 350 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 AFMP43652 599 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 ZNF365Q70YC5 407 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.75□□□□□ -1.656e-8■□□□□ 8.4
VPS13C-202ENST00000261517 MRPL44Q9H9J2 332 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PPCSQ9HAB8 311 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CACYBPQ9HB71 228 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 C1orf112Q9NSG2 853 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 ARMCX3Q9UH62 379 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PTPRMP28827 1452 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TYW5A2RUC4 315 aaKnown RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 PPIP5K2O43314 1243 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 GFPT2O94808 682 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 BBS5Q8N3I7 341 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 TTC1Q99614 292 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 THAP9Q9H5L6 903 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 FAM96AQ9H5X1 160 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.75□□□□□ -1.654e-6■□□□□ 10.2
VPS13C-202ENST00000261517 A0A1B0GUA9 196 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 CIB2O75838 187 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 IFNAR1P17181 557 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 GRAPQ13588 217 aa4.75□□□□□ -1.65
VPS13C-202ENST00000261517 GRAPLQ8TC17 118 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-202ENST00000261517 AP3B1O00203 1094 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 UTP14CQ5TAP6 766 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 EP400NLQ6ZTU2 488 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 B4E1Z4 1266 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 RPS6KA4O75676 772 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ASNSP08243 561 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 SFNP31947 248 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 IGBP1P78318 339 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 GUCY1B3Q02153 619 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms