RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Skor2A7M7C7 1008 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Pcif1P59114 706 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ribc1Q9D0B8 379 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Rsbn1lD3Z0K6 821 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Sox5P35710 763 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 GalcP54818 684 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Eif3j1Q3UGC7 261 aaKnown RBP17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Eif3j2Q66JS6 263 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Edrf1Q6GQV7 1239 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Fbxo11Q7TPD1 930 aaKnown RBP17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Esr2O08537 530 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Kifap3P70188 793 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Snx25Q3ZT31 840 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Glra4Q61603 456 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 CnstQ8CBC4 711 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Gbp2Q9Z0E6 589 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ttll1Q91V51 423 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tsnaxip1Q99P25 704 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Paip2Q9D6V8 124 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 CoblQ5NBX1 1337 aaKnown RBP17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Dnm2P39054 870 aaKnown RBP17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Znf496Q5SXI5 585 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Rsrc1Q9DBU6 334 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Vstm4T1NXB5 319 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ankrd13cQ3UX43 541 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Gas7Q60780 421 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Aggf1Q7TN31 711 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Zmynd15Q8C0R7 736 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 CutaQ9CQ89 177 aa17.16■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Gm13023A2A8N2 498 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Mybpc2Q5XKE0 1136 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Bicd1Q8BR07 835 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Krt8P11679 490 aaKnown RBP17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Cep85Q8BMK0 761 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Cep19Q9CQA8 163 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Cdk8Q8R3L8 464 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Akt1s1Q9D1F4 257 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Psma7Q9Z2U0 248 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Kcnb2A6H8H5 907 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ugt1a6bK9J7B2 531 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tex35Q14BK3 207 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tshz1Q5DTH5 1084 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Fxr1Q61584 677 aaKnown RBP17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ugt1a6Q64435 531 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Q66JV7 365 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ncoa7Q6DFV7 943 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ugt1a7cQ6ZQM8 531 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Stoml1Q8CI66 399 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Kiaa0319lQ8K135 1048 aa17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Atp1a1Q8VDN2 1023 aaKnown RBP17.15■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Slc39a2G3X943 309 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ccng2O08918 344 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 MybP06876 636 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Evi5P97366 809 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Fmnl3Q6ZPF4 1028 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Lrrc32G3XA59 663 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 LdhbP16125 334 aaKnown RBP17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Igsf3Q6ZQA6 1194 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Naa25Q8BWZ3 972 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 GlyctkQ8QZY2 523 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 NktrP30415 1453 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 4932429P05RikA2ADI4 785 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Acad12D3Z7X0 555 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Myo1aO88329 1043 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Adssl1P28650 457 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 CebpaP53566 359 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Cct5P80316 541 aaKnown RBP17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Krt14Q61781 484 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Krt9Q6RHW0 743 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ube2oQ6ZPJ3 1288 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ankrd24Q80VM7 985 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Lrrc41Q8K1C9 807 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ushbp1Q8R370 680 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Slit3Q9WVB4 1523 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Kiaa0319Q5SZV5 1081 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Hdac4Q6NZM9 1076 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Tmem59lQ7TNI2 337 aa17.14■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Grin2dQ03391 1323 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 AW822073A0A0N4SUK1 652 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 DohhA0A1Y7VJ29 135 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Tldc2A2ACG1 198 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Tex13cD3YU32 604 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Rad51bO35719 350 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Cd248Q91V98 765 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Alppl2P24823 529 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Znf532Q6NXK2 1036 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Epn1Q80VP1 575 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Tcp11l2Q8K1H7 517 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Cd2bp2Q9CWK3 342 aaKnown RBP17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Snrnp35Q9D384 244 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Slfn1Q9Z0I7 337 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Mdc1Q5PSV9 1707 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Kif5cP28738 956 aaKnown RBP17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Cdc37Q61081 379 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Slc9a1Q61165 820 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Slc7a6osQ7TPE5 306 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Cdc23Q8BGZ4 597 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Pnma3Q8JZW8 466 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Usp33Q8R5K2 909 aa17.13■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Scg2Q03517 617 aa17.12■□□□□ 0.33
Retrieved 100 of 22,080 RNA–protein pairs in 19.7 ms