RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Slc44a4Q91VA1 707 aa18.13■□□□□ 0.49
Trim28-201ENSMUST00000005705 Uchl5Q9WUP7 329 aa18.13■□□□□ 0.49
Trim28-201ENSMUST00000005705 Gm11983V9GXS8 105 aa18.13■□□□□ 0.49
Trim28-201ENSMUST00000005705 Znfx1Q8R151 1909 aaKnown RBP18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 A430078G23RikE9Q7Y4 484 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Gnat2P50149 354 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Sec31aQ3UPL0 1230 aaKnown RBP18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Armc2Q3URY6 854 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Gngt1Q61012 74 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Cep95Q8BVV7 827 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Exoc1Q8R3S6 894 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Eps8l2Q99K30 729 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 HelqQ2VPA6 1069 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Ttc14Q9CSP9 761 aa18.12■□□□□ 0.49
Trim28-201ENSMUST00000005705 Cyb5rlB1AS42 316 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Ube4aE9Q735 1028 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Nap1l1P28656 391 aaKnown RBP18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Traf3ip1Q149C2 625 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Olfr121Q5CZY0 321 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Yars2Q8BYL4 472 aaKnown RBP18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Gpr108Q91WD0 569 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 1700018B08RikQ9DA83 213 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Knop1Q9Z2Q2 478 aaKnown RBP18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Krt78E9Q0F0 1068 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Ankrd13aQ80UP5 588 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Gpcpd1Q8C0L9 675 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Kifap3P70188 793 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Znf697Q569E7 569 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Myo19Q5SV80 963 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Irak1Q62406 710 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Prpf40bQ80W14 870 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 AdarQ99MU3 1178 aaKnown RBP18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Git2Q9JLQ2 708 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Dpf1Q9QX66 387 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Mast2Q60592 1734 aa18.11■□□□□ 0.49
Trim28-201ENSMUST00000005705 Ckap2Q3V1H1 664 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Spag7Q7TNE3 227 aaKnown RBP18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 KhnynQ80U38 671 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Slc13a4Q8BZ82 625 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Cxcl11Q9JHH5 100 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Klra1P20937 262 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Kiaa1468Q148V7 1216 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Ccdc181Q80ZU5 509 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Fam161bQ8CB59 589 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 AdpgkQ8VDL4 496 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Slc2a13Q3UHK1 637 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Ezh2Q61188 746 aaKnown RBP18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Mtss1lQ6P9S0 715 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Smarca1Q6PGB8 1046 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 SowahdQ8BY98 327 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 MtrrQ8C1A3 696 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Leng8Q8CBY3 785 aaKnown RBP18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Hps4Q99KG7 671 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Brms1Q99N20 246 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Tube1Q9D6T1 475 aa18.1■□□□□ 0.49
Trim28-201ENSMUST00000005705 Lrrc4bP0C192 709 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Tdo2P48776 406 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Asic3Q6X1Y6 530 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Tcp10aQ80W76 438 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Bpifb6Q8BU51 449 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Paf1Q8K2T8 535 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 PpanQ91YU8 470 aaKnown RBP18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Sar1bQ9CQC9 198 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Alppl2P24823 529 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Terf1P70371 421 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 VrtnQ3SYK4 740 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 RadxQ8C779 850 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Adcy3Q8VHH7 1145 aa18.09■□□□□ 0.49
Trim28-201ENSMUST00000005705 Odf2A3KGV1 830 aaKnown RBP18.08■□□□□ 0.49
Trim28-201ENSMUST00000005705 DgkiD3YWQ0 1071 aa18.08■□□□□ 0.49
Trim28-201ENSMUST00000005705 Pbx1P41778 430 aa18.08■□□□□ 0.49
Trim28-201ENSMUST00000005705 Cacnb3P54285 484 aa18.08■□□□□ 0.49
Trim28-201ENSMUST00000005705 Pafah1b1P63005 410 aaKnown RBP18.08■□□□□ 0.49
Trim28-201ENSMUST00000005705 Stim1P70302 685 aa18.08■□□□□ 0.49
Trim28-201ENSMUST00000005705 Sap30bpQ02614 308 aa18.08■□□□□ 0.49
Trim28-201ENSMUST00000005705 Pls1Q3V0K9 630 aa18.08■□□□□ 0.49
Trim28-201ENSMUST00000005705 Ssrp1Q08943 708 aaKnown RBP18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Sugp2Q8CH09 1067 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Stx17Q9D0I4 301 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Tfap4Q9JIZ5 338 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Col20a1Q923P0 1320 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Rhbdl3P58873 404 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Krt40Q6IFX3 439 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Adam6bQ6IMH7 756 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 GypcQ78HU7 95 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Ttc26Q8BS45 554 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Prpf3Q922U1 683 aaKnown RBP18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Cd2apQ9JLQ0 637 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 Prl2c5Q9JLV9 222 aa18.08■□□□□ 0.48
Trim28-201ENSMUST00000005705 1700003F12RikA2AKE5 210 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 Trim55G3X8Y1 545 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 Tom1O88746 492 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 RaraP11416 462 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 Cdr2P97817 455 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 Bbof1Q3V079 533 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 Q8C5C9 218 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 Lmbrd1Q8K0B2 537 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 McamQ8R2Y2 648 aaKnown RBP18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 Dph6Q9CQ28 267 aa18.07■□□□□ 0.48
Trim28-201ENSMUST00000005705 Fut8Q9WTS2 575 aa18.07■□□□□ 0.48
Retrieved 100 of 22,080 RNA–protein pairs in 53.9 ms