RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W CUS2P53830 285 aaPredicted RBP5.9□□□□□ -1.47
ATG4YNL223W VAC7P53950 1165 aa5.9□□□□□ -1.47
ATG4YNL223W NHP10Q03435 203 aa5.9□□□□□ -1.47
ATG4YNL223W GAS3Q03655 524 aa5.9□□□□□ -1.47
ATG4YNL223W YET2Q04210 160 aa5.9□□□□□ -1.47
ATG4YNL223W RCO1Q04779 684 aa5.9□□□□□ -1.47
ATG4YNL223W FAR10Q06001 478 aa5.9□□□□□ -1.47
ATG4YNL223W RSB1Q08417 382 aa5.9□□□□□ -1.47
ATG4YNL223W CLP1Q08685 445 aaPredicted RBP5.9□□□□□ -1.47
ATG4YNL223W YPR202WQ08993 238 aa5.9□□□□□ -1.47
ATG4YNL223W PDH1Q12428 516 aaKnown RBP5.9□□□□□ -1.47
ATG4YNL223W YOR338WQ99326 363 aa5.9□□□□□ -1.47
ATG4YNL223W UBR1P19812 1950 aa5.89□□□□□ -1.47
ATG4YNL223W HEM2P05373 342 aa5.89□□□□□ -1.47
ATG4YNL223W SBP1P10080 294 aaKnown RBP5.89□□□□□ -1.47
ATG4YNL223W RAM1P22007 431 aa5.89□□□□□ -1.47
ATG4YNL223W DGR2P32330 852 aa5.89□□□□□ -1.47
ATG4YNL223W SKT5P34226 696 aa5.89□□□□□ -1.47
ATG4YNL223W THI80P35202 319 aa5.89□□□□□ -1.47
ATG4YNL223W NUP120P35729 1037 aa5.89□□□□□ -1.47
ATG4YNL223W STB6P36085 766 aa5.89□□□□□ -1.47
ATG4YNL223W YBR259WP38338 688 aa5.89□□□□□ -1.47
ATG4YNL223W ARP1P38696 384 aa5.89□□□□□ -1.47
ATG4YNL223W EFM1P38732 585 aa5.89□□□□□ -1.47
ATG4YNL223W TRM5P38793 499 aa5.89□□□□□ -1.47
ATG4YNL223W PTC2P39966 464 aaKnown RBP5.89□□□□□ -1.47
ATG4YNL223W ALG5P40350 334 aa5.89□□□□□ -1.47
ATG4YNL223W RLP7P40693 322 aaKnown RBP5.89□□□□□ -1.47
ATG4YNL223W GLG2P47011 380 aa5.89□□□□□ -1.47
ATG4YNL223W PYK2P52489 506 aaKnown RBP5.89□□□□□ -1.47
ATG4YNL223W EMC4P53073 190 aa5.89□□□□□ -1.47
ATG4YNL223W SPC105P53148 917 aa5.89□□□□□ -1.47
ATG4YNL223W CLD1P53264 445 aa5.89□□□□□ -1.47
ATG4YNL223W FRE4P53746 719 aa5.89□□□□□ -1.47
ATG4YNL223W HEL2Q05580 639 aaKnown RBP5.89□□□□□ -1.47
ATG4YNL223W LCB5Q06147 687 aaKnown RBP5.89□□□□□ -1.47
ATG4YNL223W IRC10Q08118 586 aa5.89□□□□□ -1.47
ATG4YNL223W GPN2Q08726 347 aaPredicted RBP5.89□□□□□ -1.47
ATG4YNL223W SNX3Q08826 162 aaKnown RBP5.89□□□□□ -1.47
ATG4YNL223W FLC1Q08967 793 aa5.89□□□□□ -1.47
ATG4YNL223W TAO3P40468 2376 aa5.88□□□□□ -1.47
ATG4YNL223W SPS22P25380 463 aa5.88□□□□□ -1.47
ATG4YNL223W SFP1P32432 683 aa5.88□□□□□ -1.47
ATG4YNL223W PTH2P34222 208 aa5.88□□□□□ -1.47
ATG4YNL223W ARN1P38731 627 aa5.88□□□□□ -1.47
ATG4YNL223W YHR045WP38775 560 aa5.88□□□□□ -1.47
ATG4YNL223W MPT5P39016 859 aaKnown RBP RIP-Chip data5.88□□□□□ -1.47not detected
ATG4YNL223W TIM17P39515 158 aa5.88□□□□□ -1.47
ATG4YNL223W RPH1P39956 796 aa5.88□□□□□ -1.47
ATG4YNL223W OYE3P41816 400 aaPredicted RBP5.88□□□□□ -1.47
ATG4YNL223W ILM1P47155 203 aa5.88□□□□□ -1.47
ATG4YNL223W YJR154WP47181 346 aa5.88□□□□□ -1.47
ATG4YNL223W NUP84P52891 726 aa5.88□□□□□ -1.47
ATG4YNL223W FLC3P53121 802 aa5.88□□□□□ -1.47
ATG4YNL223W EFM5P53200 248 aaKnown RBP5.88□□□□□ -1.47
ATG4YNL223W NOP19P53317 196 aaPredicted RBP5.88□□□□□ -1.47
ATG4YNL223W IBD2P53892 351 aa5.88□□□□□ -1.47
ATG4YNL223W YNL010WP53981 241 aaKnown RBP5.88□□□□□ -1.47
ATG4YNL223W REX2P54964 269 aaKnown RBP5.88□□□□□ -1.47
ATG4YNL223W PEX13P80667 386 aa5.88□□□□□ -1.47
ATG4YNL223W JIP5Q06214 492 aaPredicted RBP5.88□□□□□ -1.47
ATG4YNL223W ESA1Q08649 445 aa5.88□□□□□ -1.47
ATG4YNL223W SEC63P14906 663 aa5.87□□□□□ -1.47
ATG4YNL223W REC107P21651 314 aa5.87□□□□□ -1.47
ATG4YNL223W YJU3P28321 313 aa5.87□□□□□ -1.47
ATG4YNL223W BRF1P29056 596 aa5.87□□□□□ -1.47
ATG4YNL223W PXA2P34230 853 aa5.87□□□□□ -1.47
ATG4YNL223W PTC1P35182 281 aa5.87□□□□□ -1.47
ATG4YNL223W SCS2P40075 244 aaKnown RBP5.87□□□□□ -1.47
ATG4YNL223W CCT7P42943 550 aaKnown RBP5.87□□□□□ -1.47
ATG4YNL223W SET2P46995 733 aaKnown RBP5.87□□□□□ -1.47
ATG4YNL223W TIS11P47977 285 aa5.87□□□□□ -1.47
ATG4YNL223W GTR2P53290 341 aa5.87□□□□□ -1.47
ATG4YNL223W YNR065CP53751 1116 aa5.87□□□□□ -1.47
ATG4YNL223W YML131WQ03102 365 aa5.87□□□□□ -1.47
ATG4YNL223W YDR476CQ03362 224 aa5.87□□□□□ -1.47
ATG4YNL223W ACL4Q03771 387 aa5.87□□□□□ -1.47
ATG4YNL223W YHM2Q04013 314 aa5.87□□□□□ -1.47
ATG4YNL223W TRM12Q04235 462 aa5.87□□□□□ -1.47
ATG4YNL223W RIF2Q06208 395 aa5.87□□□□□ -1.47
ATG4YNL223W VAM6Q07468 1049 aa5.87□□□□□ -1.47
ATG4YNL223W YDL121CQ07541 149 aa5.87□□□□□ -1.47
ATG4YNL223W YEH2Q07950 538 aa5.87□□□□□ -1.47
ATG4YNL223W YIG1Q08956 461 aa5.87□□□□□ -1.47
ATG4YNL223W ATG34Q12292 412 aa5.87□□□□□ -1.47
ATG4YNL223W AHA1Q12449 350 aaKnown RBP5.87□□□□□ -1.47
ATG4YNL223W YDR034W-BQ6Q5X2 51 aa5.87□□□□□ -1.47
ATG4YNL223W TRP3P00937 484 aa5.86□□□□□ -1.47
ATG4YNL223W APA1P16550 321 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W UBA1P22515 1024 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W VPS34P22543 875 aa5.86□□□□□ -1.47
ATG4YNL223W DBR1P24309 405 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W BUB2P26448 306 aaPredicted RBP5.86□□□□□ -1.47
ATG4YNL223W SPS19P32573 292 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W STE5P32917 917 aa5.86□□□□□ -1.47
ATG4YNL223W PRP18P33411 251 aaPredicted RBP5.86□□□□□ -1.47
ATG4YNL223W MED6P38782 295 aa5.86□□□□□ -1.47
ATG4YNL223W LRP1P38801 184 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W UTP9P38882 575 aaKnown RBP5.86□□□□□ -1.47
ATG4YNL223W DHH1P39517 506 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms