RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	BCS1	P32839	456 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	RPT5	P33297	434 aa	Known RBP	4.93	□□□□□ -1.62
CDC28	YBR160W	PDX3	P38075	228 aa	Known RBP	4.93	□□□□□ -1.62
CDC28	YBR160W	YBL028C	P38202	106 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	ERC1	P38767	581 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	CKB2	P38930	258 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	YDR089W	P38966	869 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	SHC1	P39000	512 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	NPT1	P39683	429 aa	Known RBP	4.93	□□□□□ -1.62
CDC28	YBR160W	ERP2	P39704	215 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	FLC2	P39719	783 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	KHA1	P40309	873 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	UBP7	P40453	1071 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	SYG1	P40528	902 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	TAH11	P47112	604 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	EMC2	P47133	292 aa	Known RBP	4.93	□□□□□ -1.62
CDC28	YBR160W	TRF5	P48561	642 aa	Known RBP	4.93	□□□□□ -1.62
CDC28	YBR160W	HSH155	P49955	971 aa	Known RBP	4.93	□□□□□ -1.62
CDC28	YBR160W	MAL11	P53048	616 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	PBP1	P53297	722 aa	Known RBP	4.93	□□□□□ -1.62
CDC28	YBR160W	YPR003C	P53394	754 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	TEP1	P53916	434 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	MUB1	Q03162	620 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	GRX3	Q03835	250 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	YAP6	Q03935	383 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	ATG26	Q06321	1198 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	GGA1	Q06336	557 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	TPO1	Q07824	586 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	THI73	Q07904	523 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	ADF1	Q2V2Q1	113 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	TY1B-A	O13527	1196 aa	Known RBP	4.92	□□□□□ -1.62
CDC28	YBR160W	SEM1	O94742	89 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	PMA1	P05030	918 aa	Known RBP	4.92	□□□□□ -1.62
CDC28	YBR160W	KSS1	P14681	368 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	PUT4	P15380	627 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	SEC1	P30619	724 aa	Known RBP	4.92	□□□□□ -1.62
CDC28	YBR160W	ZIP1	P31111	875 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	BEM3	P32873	1128 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	CYM1	P32898	989 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	MRP4	P32902	394 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	ATG19	P35193	415 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	TPO5	P36029	618 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	RCN1	P36054	211 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	YMC2	P38087	329 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	KAP104	P38217	918 aa	Known RBP	4.92	□□□□□ -1.62
CDC28	YBR160W	BZZ1	P38822	633 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	FAA2	P39518	744 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	YJL206C	P39529	758 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	ZRG8	P40021	1076 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	YER158C	P40095	573 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	RIC1	P40395	1056 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	IRC5	P43610	853 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	CIK1	Q01649	594 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	TAF11	Q04226	346 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	MCM21	Q06675	368 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	RXT3	Q07458	294 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	CRD1	Q07560	283 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	PEX15	Q08215	383 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	YOR342C	Q12182	319 aa		4.92	□□□□□ -1.62
CDC28	YBR160W	STE2	D6VTK4	431 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	YLR358C	O13565	187 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	CAR1	P00812	333 aa	Known RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	TUB2	P02557	457 aa	Known RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	REP1	P03871	373 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	COR1	P07256	457 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	FAR1	P21268	830 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	AMD2	P22580	549 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	EMC1	P25574	760 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	CTS1	P29029	562 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	MEI4	P29467	408 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	URA10	P30402	227 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	ATP7	P30902	174 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	RIM1	P32445	135 aa	Known RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	PHA2	P32452	334 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	GYP6	P32806	458 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	SKG6	P32900	734 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	SRP101	P32916	621 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	REC104	P33323	182 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	TGL1	P34163	548 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	NTR2	P36118	322 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	ERT1	P38140	529 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	YBR285W	P38354	144 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	PHO89	P38361	574 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	PET100	P38958	111 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	GIP4	P39732	760 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	AGP3	P43548	558 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	SWP82	P43554	623 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	MET12	P46151	657 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	ALY2	P47029	1046 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	YJL055W	P47044	245 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	ASN1	P49089	572 aa	Known RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	GCV2	P49095	1034 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	IMD4	P50094	524 aa	Known RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	YGR012W	P53206	393 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	GTF1	P53260	183 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	RTT102	P53330	157 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	TRS130	Q03660	1102 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	GPI17	Q04080	534 aa		4.91	□□□□□ -1.62
CDC28	YBR160W	YMR226C	Q05016	267 aa	Known RBP	4.91	□□□□□ -1.62
CDC28	YBR160W	AAD15	Q08361	143 aa		4.91	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 26.7 ms