RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CRELD1Q96HD1 420 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 INO80BQ9C086 356 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MYLK2Q9H1R3 596 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 A0A1B0GW55 424 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 OPLAHO14841 1288 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DUX4L2P0CJ85 424 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DUX4L3P0CJ86 424 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DUX4L4P0CJ87 422 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DUX4L5P0CJ88 424 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DUX4L6P0CJ89 424 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DUX4L7P0CJ90 424 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 LMNB1P20700 586 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 INAVAQ3KP66 663 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CROCCP2Q86T23 111 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 LUZP2Q86TE4 346 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 NUDCD3Q8IVD9 361 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 HELBQ8NG08 1087 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 HSPH1Q92598 858 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 OSBP2Q969R2 916 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 JAKMIP1Q96N16 626 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CRNKL1Q9BZJ0 848 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 RBSNQ9H1K0 784 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SLAIN2Q9P270 581 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DUX4Q9UBX2 424 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SCINQ9Y6U3 715 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TEX14Q8IWB6 1497 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 WDR97A6NE52 1622 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 H2AFYO75367 372 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TMCC1O94876 653 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC159P0C7I6 412 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TNFRSF8P28908 595 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 IRX4P78413 519 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ARFGAP2Q8N6H7 521 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ENAHQ8N8S7 591 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TACO1Q9BSH4 297 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MTMR7Q9Y216 660 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MROH7-TTC4A0A0A0MT08 1334 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MROH7Q68CQ1 1323 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PLEKHH2Q8IVE3 1493 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TMEM110-MUSTN1A8MSY1 372 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 KDM4AO75164 1064 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SLC12A2P55011 1212 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 RASSF7Q02833 373 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PRPF4BQ13523 1007 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF280CQ8ND82 737 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PARD3BQ8TEW8 1205 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 STAG1Q8WVM7 1258 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TEKT2Q9UIF3 430 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SHROOM3Q8TF72 1996 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CHD2O14647 1828 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ZMYM3Q14202 1370 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 LRRD1A4D1F6 860 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 M0R2C6 588 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PYGBP11216 843 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ANGPT1Q15389 498 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CEP55Q53EZ4 464 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 NBPF12Q5TAG4 269 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MTFR2Q6P444 385 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 BZW1Q7L1Q6 419 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF438Q7Z4V0 828 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ADAT2Q7Z6V5 191 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CATIPQ7Z7H3 387 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MRPL46Q9H2W6 279 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DNAJC11Q9NVH1 559 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DDX56Q9NY93 547 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CPSF3Q9UKF6 684 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 BRD4O60885 1362 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 LMTK3Q96Q04 1460 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SYNJ1O43426 1573 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 DYTNA2CJ06 578 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ADCY5O95622 1261 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ZC3H6P61129 1189 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 C16orf87Q6PH81 154 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TTC6Q86TZ1 520 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 LZICQ8WZA0 190 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 KIFC2Q96AC6 838 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TRIM56Q9BRZ2 755 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ANO10Q9NW15 660 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SCHIP1Q9P0W5 487 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 BAG5Q9UL15 447 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PCDHB11Q9Y5F2 797 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8IPA6NC78 632 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 NCKAP1LP55160 1127 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 TNS4Q8IZW8 715 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 B3GALNT2Q8NCR0 500 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ARHGEF2Q92974 986 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 NAPBQ9H115 298 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 MMRN2Q9H8L6 949 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CNNM2Q9H8M5 875 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SMARCAL1Q9NZC9 954 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SLC13A4Q9UKG4 626 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 KCNH3Q9ULD8 1083 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 PSAT1Q9Y617 370 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 GJA3Q9Y6H8 435 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 C19orf81C9J6K1 198 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 HIP1RO75146 1068 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 DMWDQ09019 674 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 MYO1EQ12965 1108 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 IFIT5Q13325 482 aaKnown RBP3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms