RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 MAGEA10P43363 369 aaPredicted RBP16.54■□□□□ 0.24
LINC00339-211ENST00000641009 SLC4A3P48751 1232 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 ATN1P54259 1190 aaPredicted RBP16.54■□□□□ 0.24
LINC00339-211ENST00000641009 ZNF792Q3KQV3 632 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 CPXCR1Q8N123 301 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 GMCL1P1Q8NEA9 526 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 CHMP4CQ96CF2 233 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 TEX13BQ9BXU2 312 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 SOX1O00570 391 aaPredicted RBP16.54■□□□□ 0.24
LINC00339-211ENST00000641009 MYCNP04198 464 aaPredicted RBP16.54■□□□□ 0.24
LINC00339-211ENST00000641009 BMP8BP34820 402 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 SLFN13Q68D06 897 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 FAM227BQ96M60 508 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 FEM1BQ9UK73 627 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 SYNPO2Q9UMS6 1093 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.54■□□□□ 0.24
LINC00339-211ENST00000641009 TACC3Q9Y6A5 838 aa16.54■□□□□ 0.24
LINC00339-211ENST00000641009 A0A0D9SFI3 127 aa16.53■□□□□ 0.24
LINC00339-211ENST00000641009 ZBED4O75132 1171 aa16.53■□□□□ 0.24
LINC00339-211ENST00000641009 B4GALNT3Q6L9W6 998 aa16.53■□□□□ 0.24
LINC00339-211ENST00000641009 ARRDC4Q8NCT1 418 aa16.53■□□□□ 0.24
LINC00339-211ENST00000641009 TINF2Q9BSI4 451 aa16.53■□□□□ 0.24
LINC00339-211ENST00000641009 SLC38A10Q9HBR0 1119 aa16.53■□□□□ 0.24
LINC00339-211ENST00000641009 RAVER2Q9HCJ3 691 aaKnown RBP16.53■□□□□ 0.24
LINC00339-211ENST00000641009 DIS3Q9Y2L1 958 aaKnown RBP16.53■□□□□ 0.24
LINC00339-211ENST00000641009 CTDP1Q9Y5B0 961 aaPredicted RBP16.53■□□□□ 0.24
LINC00339-211ENST00000641009 TSPY2A6NKD2 308 aa16.52■□□□□ 0.23
LINC00339-211ENST00000641009 KBTBD13C9JR72 458 aa16.52■□□□□ 0.23
LINC00339-211ENST00000641009 ATP2A1O14983 1001 aa16.52■□□□□ 0.23
LINC00339-211ENST00000641009 NMT2O60551 498 aa16.52■□□□□ 0.23
LINC00339-211ENST00000641009 BMP3P12645 472 aa16.52■□□□□ 0.23
LINC00339-211ENST00000641009 TAL1P17542 331 aaPredicted RBP16.52■□□□□ 0.23
LINC00339-211ENST00000641009 LRCH3Q96II8 777 aa16.52■□□□□ 0.23
LINC00339-211ENST00000641009 HELLSQ9NRZ9 838 aa16.52■□□□□ 0.23
LINC00339-211ENST00000641009 ISY1Q9ULR0 285 aaKnown RBP16.52■□□□□ 0.23
LINC00339-211ENST00000641009 LAMA4Q16363 1823 aa16.52■□□□□ 0.23
LINC00339-211ENST00000641009 MDM2Q00987 491 aaPredicted RBP16.51■□□□□ 0.23
LINC00339-211ENST00000641009 LRRC41Q15345 812 aa16.51■□□□□ 0.23
LINC00339-211ENST00000641009 DDX11Q96FC9 970 aa16.51■□□□□ 0.23
LINC00339-211ENST00000641009 IL17RBQ9NRM6 502 aa16.51■□□□□ 0.23
LINC00339-211ENST00000641009 ANAPC4Q9UJX5 808 aa16.51■□□□□ 0.23
LINC00339-211ENST00000641009 STX8Q9UNK0 236 aa16.51■□□□□ 0.23
LINC00339-211ENST00000641009 LCTP09848 1927 aa16.51■□□□□ 0.23
LINC00339-211ENST00000641009 DNAJC25-GNG10A0A024R161 153 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 TRIM6-TRIM34B2RNG4 842 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 TMEM232C9JQI7 657 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 RANBP6O60518 1105 aaKnown RBP16.5■□□□□ 0.23
LINC00339-211ENST00000641009 RTP1P59025 263 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 AAMPQ13685 434 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 MCMDC2Q4G0Z9 681 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 RASGRP2Q7LDG7 609 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 ZNF589Q86UQ0 364 aaPredicted RBP16.5■□□□□ 0.23
LINC00339-211ENST00000641009 SMC5Q8IY18 1101 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 UBE2OQ9C0C9 1292 aaKnown RBP16.5■□□□□ 0.23
LINC00339-211ENST00000641009 RWDD1Q9H446 243 aaPredicted RBP16.5■□□□□ 0.23
LINC00339-211ENST00000641009 NRBP1Q9UHY1 535 aa16.5■□□□□ 0.23
LINC00339-211ENST00000641009 IGHDP01880 384 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 FGAP02671 866 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 ZNF865P0CJ78 1059 aaPredicted RBP16.49■□□□□ 0.23
LINC00339-211ENST00000641009 RARBP10826 455 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 MCCP23508 829 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 ADCYAP1R1P41586 468 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 SLC1A4P43007 532 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 STAT2P52630 851 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 IKQ13123 557 aaPredicted RBP16.49■□□□□ 0.23
LINC00339-211ENST00000641009 NMIQ13287 307 aaPredicted RBP16.49■□□□□ 0.23
LINC00339-211ENST00000641009 ALX1Q15699 326 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 SLC39A5Q6ZMH5 540 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 EXOC6Q8TAG9 804 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 RILPL2Q969X0 211 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 FERMT2Q96AC1 680 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 LENG1Q96BZ8 264 aaPredicted RBP16.49■□□□□ 0.23
LINC00339-211ENST00000641009 GMCL1Q96IK5 515 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 XPNPEP3Q9NQH7 507 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 HOMER2Q9NSB8 354 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 MTMR7Q9Y216 660 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 ATP11BQ9Y2G3 1177 aa16.49■□□□□ 0.23
LINC00339-211ENST00000641009 PGK1P00558 417 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 HSPD1P10809 573 aaKnown RBP16.48■□□□□ 0.23
LINC00339-211ENST00000641009 KCTD1Q719H9 257 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 TDHQ8IZJ6 230 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 ANKRD35Q8N283 1001 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 CNPY2Q9Y2B0 182 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 LRRC37A2A6NM11 1700 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 ORC4O43929 436 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 SNAI1O95863 264 aaPredicted RBP16.48■□□□□ 0.23
LINC00339-211ENST00000641009 AKR1A1P14550 325 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 OAZ1P54368 228 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 RRP12Q5JTH9 1297 aaKnown RBP16.48■□□□□ 0.23
LINC00339-211ENST00000641009 PPP4R3BQ5MIZ7 849 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 FAM160B2Q86V87 743 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 CHD1LQ86WJ1 897 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 CHST13Q8NET6 341 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 CHURC1Q8WUH1 139 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 STAG1Q8WVM7 1258 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 TOMM22Q9NS69 142 aa16.48■□□□□ 0.23
LINC00339-211ENST00000641009 ZNF536O15090 1300 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 SYNGAP1Q96PV0 1343 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 FGRP09769 529 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 SNAP25P60880 206 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms