RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 REPS2Q8NFH8 660 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.67■□□□□ 0.42
PNKP-218ENST00000625299 VTI1AQ96AJ9 217 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 DDX11Q96FC9 970 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 DDRGK1Q96HY6 314 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 GAS2L1Q99501 681 aaPredicted RBP17.67■□□□□ 0.42
PNKP-218ENST00000625299 NUP88Q99567 741 aaPredicted RBP17.67■□□□□ 0.42
PNKP-218ENST00000625299 KANSL2Q9H9L4 492 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 MYO9BQ13459 2157 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 GRXCR1A8MXD5 290 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 CCER2I3L3R5 266 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 C6orf222P0C671 652 aaPredicted RBP17.66■□□□□ 0.42
PNKP-218ENST00000625299 COL9A1P20849 921 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 ADD2P35612 726 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 PBX2P40425 430 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 MFSD5Q6N075 450 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 GLT1D1Q96MS3 346 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 PBX4Q9BYU1 374 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 PPP1R12CQ9BZL4 782 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 BOLA2Q9H3K6 86 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 PRDM12Q9H4Q4 367 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 PAG1Q9NWQ8 432 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 TBX21Q9UL17 535 aa17.66■□□□□ 0.42
PNKP-218ENST00000625299 SNAI1O95863 264 aaPredicted RBP17.65■□□□□ 0.42
PNKP-218ENST00000625299 CHGBP05060 677 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 ACRP10323 421 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 IRX5P78411 483 aaPredicted RBP17.65■□□□□ 0.42
PNKP-218ENST00000625299 PPIGQ13427 754 aaKnown RBP eCLIP17.65■□□□□ 0.422e-10■■■■□ 21.7
PNKP-218ENST00000625299 CCDC174Q6PII3 467 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 KLHDC9Q8NEP7 349 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 KIF1BPQ96EK5 621 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 SLF1Q9BQI6 1058 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 TEX13BQ9BXU2 312 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.65■□□□□ 0.424e-7■■■■■ 40.9
PNKP-218ENST00000625299 SLC4A4Q9Y6R1 1079 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 MCM3APO60318 1980 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 MROH7Q68CQ1 1323 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 SYNGAP1Q96PV0 1343 aa17.65■□□□□ 0.42
PNKP-218ENST00000625299 MYH7P12883 1935 aa17.64■□□□□ 0.42
PNKP-218ENST00000625299 CSF2RAP15509 400 aa17.64■□□□□ 0.41
PNKP-218ENST00000625299 TMEM240Q5SV17 173 aa17.64■□□□□ 0.41
PNKP-218ENST00000625299 CPXCR1Q8N123 301 aa17.64■□□□□ 0.41
PNKP-218ENST00000625299 STK11IPQ8N1F8 1099 aa17.64■□□□□ 0.41
PNKP-218ENST00000625299 MSL3Q8N5Y2 521 aaKnown RBP17.64■□□□□ 0.41
PNKP-218ENST00000625299 PANK1Q8TE04 598 aa17.64■□□□□ 0.41
PNKP-218ENST00000625299 SPC25Q9HBM1 224 aa17.64■□□□□ 0.41
PNKP-218ENST00000625299 RIPK3Q9Y572 518 aa17.64■□□□□ 0.41
PNKP-218ENST00000625299 CTDP1Q9Y5B0 961 aaPredicted RBP17.64■□□□□ 0.41
PNKP-218ENST00000625299 DUSP11O75319 330 aaKnown RBP17.63■□□□□ 0.41
PNKP-218ENST00000625299 ASGR1P07306 291 aa17.63■□□□□ 0.41
PNKP-218ENST00000625299 CCDC85BQ15834 202 aaPredicted RBP17.63■□□□□ 0.41
PNKP-218ENST00000625299 CCSAPQ6IQ19 270 aaPredicted RBP17.63■□□□□ 0.41
PNKP-218ENST00000625299 C16orf59Q7L2K0 433 aa17.63■□□□□ 0.41
PNKP-218ENST00000625299 TMEM199Q8N511 208 aa17.63■□□□□ 0.41
PNKP-218ENST00000625299 PCSK9Q8NBP7 692 aaKnown RBP17.63■□□□□ 0.41
PNKP-218ENST00000625299 THEGQ9P2T0 379 aa17.63■□□□□ 0.41
PNKP-218ENST00000625299 A0A0U1RQG5 324 aaPredicted RBP17.62■□□□□ 0.41
PNKP-218ENST00000625299 IGFBP4P22692 258 aa17.62■□□□□ 0.41
PNKP-218ENST00000625299 ACVR2BQ13705 512 aa17.62■□□□□ 0.41
PNKP-218ENST00000625299 CTR9Q6PD62 1173 aa17.62■□□□□ 0.41
PNKP-218ENST00000625299 PSRC1Q6PGN9 363 aaPredicted RBP17.62■□□□□ 0.41
PNKP-218ENST00000625299 ZNF365Q70YC5 407 aa17.62■□□□□ 0.41
PNKP-218ENST00000625299 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.62■□□□□ 0.41
PNKP-218ENST00000625299 RAPGEFL1Q9UHV5 662 aa17.62■□□□□ 0.41
PNKP-218ENST00000625299 ELP1O95163 1332 aa17.62■□□□□ 0.41
PNKP-218ENST00000625299 GREB1LQ9C091 1923 aaPredicted RBP17.61■□□□□ 0.41
PNKP-218ENST00000625299 ARVCFO00192 962 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 TLR3O15455 904 aaKnown RBP17.61■□□□□ 0.41
PNKP-218ENST00000625299 ADCY6O43306 1168 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 CCDC144BQ3MJ40 725 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 GNASQ5JWF2 1037 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 MAMDC4Q6UXC1 1216 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 ANKRD35Q8N283 1001 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 ATXN2LQ8WWM7 1075 aaKnown RBP17.61■□□□□ 0.41
PNKP-218ENST00000625299 KIFC2Q96AC6 838 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.61■□□□□ 0.41
PNKP-218ENST00000625299 RAVER2Q9HCJ3 691 aaKnown RBP17.61■□□□□ 0.41
PNKP-218ENST00000625299 MSRAQ9UJ68 235 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 GBF1Q92538 1859 aa17.61■□□□□ 0.41
PNKP-218ENST00000625299 MYH4Q9Y623 1939 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 DNAJC25-GNG10A0A024R161 153 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 F5H6K3 240 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 ZBED4O75132 1171 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 NDUFB10O96000 172 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 CST5P28325 142 aaPredicted RBP17.6■□□□□ 0.41
PNKP-218ENST00000625299 CYP2C18P33260 490 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 CDK7P50613 346 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 KLRC3Q07444 240 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 FAM126BQ8IXS8 530 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 IL27Q8NEV9 243 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 ADAMTS19Q8TE59 1207 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 ASB2Q96Q27 587 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 MKNK2Q9HBH9 465 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 ARPP21Q9UBL0 812 aaPredicted RBP17.6■□□□□ 0.41
PNKP-218ENST00000625299 ZBED9Q6R2W3 1325 aa17.6■□□□□ 0.41
PNKP-218ENST00000625299 GJA9P57773 515 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 ADGRE1Q14246 886 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 UBE3CQ15386 1083 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 AKNAD1Q5T1N1 836 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 RASIP1Q5U651 963 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms