RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SMCO2A6NFE2 343 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 CHRNA5P30532 468 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 LETM2Q2VYF4 491 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 KANK3Q6NY19 840 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 TMED8Q6PL24 325 aaPredicted RBP12.06□□□□□ -0.48
CUX1-221ENST00000622516 SLF2Q8IX21 1173 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 MLKLQ8NB16 471 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 COA7Q96BR5 231 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 FAM163AQ96GL9 167 aaPredicted RBP12.06□□□□□ -0.48
CUX1-221ENST00000622516 PRIMPOLQ96LW4 560 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 BIN2Q9UBW5 565 aaPredicted RBP12.06□□□□□ -0.48
CUX1-221ENST00000622516 PARP3Q9Y6F1 533 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 NPR1P16066 1061 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 GNAQP50148 359 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 RBM5P52756 815 aaKnown RBP eCLIP12.06□□□□□ -0.484e-7■■■□□ 19.1
CUX1-221ENST00000622516 DPYDQ12882 1025 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 JAKMIP3Q5VZ66 844 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 AKT1S1Q96B36 256 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 UIMC1Q96RL1 719 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 TMEM260Q9NX78 707 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 MYH1P12882 1939 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 DDX60LQ5H9U9 1706 aaKnown RBP12.06□□□□□ -0.48
CUX1-221ENST00000622516 M0R2N6 131 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 GSDMDP57764 484 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 E4F1Q66K89 784 aaPredicted RBP12.06□□□□□ -0.48
CUX1-221ENST00000622516 SPATA20Q8TB22 786 aa12.06□□□□□ -0.48
CUX1-221ENST00000622516 CCNT1O60563 726 aaKnown RBP12.05□□□□□ -0.48
CUX1-221ENST00000622516 BMP15O95972 392 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 TOP1P11387 765 aaKnown RBP12.05□□□□□ -0.48
CUX1-221ENST00000622516 SLC16A2P36021 539 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 NAA30Q147X3 362 aaPredicted RBP12.05□□□□□ -0.48
CUX1-221ENST00000622516 E2F4Q16254 413 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 CDC42EP5Q6NZY7 148 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 SH3RF1Q7Z6J0 888 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 CCAR2Q8N163 923 aaKnown RBP12.05□□□□□ -0.48
CUX1-221ENST00000622516 IQUBQ8NA54 791 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 IMPACTQ9P2X3 320 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 NEMFO60524 1076 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 ADKP55263 362 aaKnown RBP12.05□□□□□ -0.48
CUX1-221ENST00000622516 CEP135Q66GS9 1140 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 TTBK2Q6IQ55 1244 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 MTMR4Q9NYA4 1195 aa12.05□□□□□ -0.48
CUX1-221ENST00000622516 ANKRD31Q8N7Z5 1873 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 DYNC1I1O14576 645 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 TEX33O43247 280 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 PDHBP11177 359 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 TRAPPC10P48553 1259 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 PTPN14Q15678 1187 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 CCDC178Q5BJE1 867 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 APOBEC3HQ6NTF7 200 aaKnown RBP12.04□□□□□ -0.48
CUX1-221ENST00000622516 PDXDC2PQ6P474 469 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 DTHD1Q6ZMT9 781 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 VSTM4Q8IW00 320 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 ELOA2Q8IYF1 753 aaPredicted RBP12.04□□□□□ -0.48
CUX1-221ENST00000622516 ENOX1Q8TC92 643 aaKnown RBP12.04□□□□□ -0.48
CUX1-221ENST00000622516 RRP36Q96EU6 259 aaKnown RBP12.04□□□□□ -0.48
CUX1-221ENST00000622516 EEF2KMTQ96G04 330 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 TMX4Q9H1E5 349 aaPredicted RBP12.04□□□□□ -0.48
CUX1-221ENST00000622516 SEC63Q9UGP8 760 aaKnown RBP12.04□□□□□ -0.48
CUX1-221ENST00000622516 ALDH1B1P30837 517 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 DHX8Q14562 1220 aaKnown RBP12.04□□□□□ -0.48
CUX1-221ENST00000622516 C2CD5Q86YS7 1000 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 IPO4Q8TEX9 1081 aaKnown RBP12.04□□□□□ -0.48
CUX1-221ENST00000622516 SH3GLB2Q9NR46 395 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 SERPINB13Q9UIV8 391 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 CTNND2Q9UQB3 1225 aa12.04□□□□□ -0.48
CUX1-221ENST00000622516 PPP1R3GB7ZBB8 358 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 ZNF18P17022 549 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 PDE6BP35913 854 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 STAT6P42226 847 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 RRAGBQ5VZM2 374 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 KCTD1Q719H9 257 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 CCDC148Q8NFR7 591 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 LRRC15Q8TF66 581 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 CPLX3Q8WVH0 158 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 MASTLQ96GX5 879 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 GDAQ9Y2T3 454 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 ADAMTSL1Q8N6G6 1762 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 ZBTB22O15209 634 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 CBFA2T2O43439 604 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 GABPAQ06546 454 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 ZSCAN29Q8IWY8 852 aaPredicted RBP12.03□□□□□ -0.48
CUX1-221ENST00000622516 CCDC150Q8NCX0 1101 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 DACH1Q9UI36 760 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 UBA7P41226 1012 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 TECP42680 631 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 NAALADL2Q58DX5 795 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 SOGA3Q5TF21 947 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 ZNF710Q8N1W2 664 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 TRIML1Q8N9V2 468 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 TBCKQ8TEA7 893 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 GJA10Q969M2 543 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 TEKT1Q969V4 418 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 CCDC34Q96HJ3 373 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 PDGFDQ9GZP0 370 aaPredicted RBP12.03□□□□□ -0.48
CUX1-221ENST00000622516 ZMYND12Q9H0C1 365 aa12.03□□□□□ -0.48
CUX1-221ENST00000622516 SHMT1P34896 483 aa12.02□□□□□ -0.49
CUX1-221ENST00000622516 CCT6AP40227 531 aaKnown RBP12.02□□□□□ -0.49
CUX1-221ENST00000622516 CRKP46108 304 aa12.02□□□□□ -0.49
CUX1-221ENST00000622516 CERS3Q8IU89 383 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms