RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 PLCB1Q9NQ66 1216 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CUTAO60888 179 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SERPINB4P48594 390 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 SLC44A4Q53GD3 710 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TAOK1Q7L7X3 1001 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 MOV10L1Q9BXT6 1211 aaKnown RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 BCAP29Q9UHQ4 241 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 CTDP1Q9Y5B0 961 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 GNAT3A8MTJ3 354 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 PDCD2Q16342 344 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-214ENST00000620676 ARHGAP22Q7Z5H3 698 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 TXLNGQ9NUQ3 528 aa5.54□□□□□ -1.52
VPS13D-214ENST00000620676 I3L4J1 428 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 LSP1P33241 339 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 TNIP1Q15025 636 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 ANO4Q32M45 955 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 ARHGAP45Q92619 1136 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 GPHNQ9NQX3 736 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 DKC1O60832 514 aaKnown RBP eCLIP5.53□□□□□ -1.529e-16■■■■■ 70.8
VPS13D-214ENST00000620676 MAML1Q92585 1016 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 ZKSCAN4Q969J2 545 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 ACTR5Q9H9F9 607 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 BLMP54132 1417 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 LSM1O15116 133 aaKnown RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 TEX33O43247 280 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 HYOU1Q9Y4L1 999 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 CFLARO15519 480 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 RNF113AO15541 343 aaKnown RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 KRT2P35908 639 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 ANKRD24Q8TF21 1146 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 CARD10Q9BWT7 1032 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 PDS5BQ9NTI5 1447 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 HMGXB3Q12766 1538 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 FOXN1O15353 648 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 GMNNO75496 209 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 HS2ST1Q7LGA3 356 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 NMD3Q96D46 503 aaKnown RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 DBR1Q9UK59 544 aaKnown RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 SUGT1Q9Y2Z0 365 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 POC1B-GALNT4F8VUJ3 575 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 SMC1BQ8NDV3 1235 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 DCTN4Q9UJW0 460 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 ST13P4Q8IZP2 240 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 VCX3AQ9NNX9 186 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 PAIP2BQ9ULR5 123 aaKnown RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 SPOPO43791 374 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 CHGBP05060 677 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 TXKP42681 527 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 SCTRP47872 440 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 SCNN1BP51168 640 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 COPB1P53618 953 aaKnown RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 SPAG1Q07617 926 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 KIAA2013Q8IYS2 634 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 MIGA1Q8NAN2 632 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 NUTM2BA6NNL0 878 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 NUTM2EB1AL46 878 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 TMED10P49755 219 aaKnown RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 CRYMQ14894 314 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 GRAMD1BQ3KR37 738 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 AFAP1Q8N556 730 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 ABTB2Q8N961 1025 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 B4E1Z4 1266 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 TULP2O00295 520 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 KITP10721 976 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 MTMR3Q13615 1198 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 DZIP3Q86Y13 1208 aaKnown RBP5.53□□□□□ -1.52
VPS13D-214ENST00000620676 BICD1Q96G01 975 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 RNPEPQ9H4A4 650 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 LRRC8CQ8TDW0 803 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 HDAC9Q9UKV0 1011 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 IVNS1ABPQ9Y6Y0 642 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 PSMA7O14818 248 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 NBPF9Q3BBW0 867 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 MUM1L1Q5H9M0 696 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 DDX12PQ92771 950 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 ARL8AQ96BM9 186 aa5.53□□□□□ -1.52
VPS13D-214ENST00000620676 BSPRYQ5W0U4 402 aa5.52□□□□□ -1.52
VPS13D-214ENST00000620676 PPP4R3AQ6IN85 833 aa5.52□□□□□ -1.52
VPS13D-214ENST00000620676 TTC1Q99614 292 aa5.52□□□□□ -1.52
VPS13D-214ENST00000620676 PARP3Q9Y6F1 533 aa5.52□□□□□ -1.52
VPS13D-214ENST00000620676 PLEKHG2Q9H7P9 1386 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 A6NNZ2 444 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ACSL3O95573 720 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 WTAPQ15007 396 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 TUBB8Q3ZCM7 444 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 COQ7Q99807 217 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PKD2L1Q9P0L9 805 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 TOP2AP11388 1531 aaKnown RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PDZD8Q8NEN9 1154 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 CNKSR2Q8WXI2 1034 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 CALML4Q96GE6 196 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 MMS19Q96T76 1030 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 NT5C3AQ9H0P0 336 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 SOS1Q07889 1333 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ATP6V1B1P15313 513 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ATXN3P54252 364 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PMS1P54277 932 aaKnown RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 DYMQ7RTS9 669 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 TRIM74Q86UV6 250 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms