RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PPP1R9AQ9ULJ8 1098 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 A0A0G2JMZ2 1700 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 hCG_1642624A0A1W2PR95 340 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 E7EWF7 191 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 ADORA2AP29274 412 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 CNTN2Q02246 1040 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 TMED8Q6PL24 325 aaPredicted RBP6.74□□□□□ -1.33
CPNE3-208ENST00000614678 CCDC144CPQ8IYA2 1237 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 PPP1R13LQ8WUF5 828 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 DEFB118Q96PH6 123 aa6.74□□□□□ -1.33
CPNE3-208ENST00000614678 TNKSO95271 1327 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 ADCY6O43306 1168 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 ORC4O43929 436 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 CCL5P13501 91 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 SLC1A4P43007 532 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 CACNB2Q08289 660 aaPredicted RBP6.73□□□□□ -1.33
CPNE3-208ENST00000614678 KIF22Q14807 665 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 MORN1Q5T089 497 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 USP6NLQ92738 828 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 MAP4K1Q92918 833 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 MKL1Q969V6 931 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 DSCC1Q9BVC3 393 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 TBC1D2Q9BYX2 928 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 ADAMTS5Q9UNA0 930 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 PDHBP11177 359 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 LRRFIP1Q32MZ4 808 aaKnown RBP6.73□□□□□ -1.33
CPNE3-208ENST00000614678 SNRNP48Q6IEG0 339 aaKnown RBP6.73□□□□□ -1.33
CPNE3-208ENST00000614678 ARMC5Q96C12 935 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 VAT1LQ9HCJ6 419 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 PLIN4Q96Q06 1357 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 WDR46O15213 610 aaKnown RBP6.73□□□□□ -1.33
CPNE3-208ENST00000614678 BMP3P12645 472 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 GCLCP48506 637 aaPredicted RBP6.73□□□□□ -1.33
CPNE3-208ENST00000614678 IKQ13123 557 aaPredicted RBP6.73□□□□□ -1.33
CPNE3-208ENST00000614678 BMP2KLQ5H9B9 411 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 FGD4Q96M96 766 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 CHD7Q9P2D1 2997 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 PRR12Q9ULL5 1215 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 RABGAP1Q9Y3P9 1069 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 LCTP09848 1927 aa6.73□□□□□ -1.33
CPNE3-208ENST00000614678 SLC27A2O14975 620 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 NOVP48745 357 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 CCDC96Q2M329 555 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 PLEKHH3Q7Z736 793 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 SLF1Q9BQI6 1058 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 GOPCQ9HD26 462 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 PRKAR2AP13861 404 aaKnown RBP6.72□□□□□ -1.33
CPNE3-208ENST00000614678 STAT3P40763 770 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 MNX1P50219 401 aaPredicted RBP6.72□□□□□ -1.33
CPNE3-208ENST00000614678 SEC23AQ15436 765 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 COA7Q96BR5 231 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 NFIBO00712 420 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 MYCNP04198 464 aaPredicted RBP6.72□□□□□ -1.33
CPNE3-208ENST00000614678 PTPREP23469 700 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 NECTIN1Q15223 517 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 USH1GQ495M9 461 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 GJC2Q5T442 439 aaPredicted RBP6.72□□□□□ -1.33
CPNE3-208ENST00000614678 CCDC82Q8N4S0 544 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 LPAR1Q92633 364 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 ZSCAN10Q96SZ4 725 aaPredicted RBP6.72□□□□□ -1.33
CPNE3-208ENST00000614678 HOXC10Q9NYD6 342 aa6.72□□□□□ -1.33
CPNE3-208ENST00000614678 PPP1R11O60927 126 aaPredicted RBP6.71□□□□□ -1.33
CPNE3-208ENST00000614678 NEFLP07196 543 aa6.71□□□□□ -1.33
CPNE3-208ENST00000614678 PABPC4Q13310 644 aaKnown RBP eCLIP6.71□□□□□ -1.33
CPNE3-208ENST00000614678 PKN2Q16513 984 aaKnown RBP6.71□□□□□ -1.33
CPNE3-208ENST00000614678 IMMTQ16891 758 aaKnown RBP6.71□□□□□ -1.33
CPNE3-208ENST00000614678 CREB3L3Q68CJ9 461 aa6.71□□□□□ -1.33
CPNE3-208ENST00000614678 EEPD1Q7L9B9 569 aa6.71□□□□□ -1.33
CPNE3-208ENST00000614678 SLC38A10Q9HBR0 1119 aa6.71□□□□□ -1.33
CPNE3-208ENST00000614678 CYTH3O43739 400 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 GRB14Q14449 540 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 CCAR1Q8IX12 1150 aaKnown RBP6.71□□□□□ -1.34
CPNE3-208ENST00000614678 MB21D2Q8IYB1 491 aaPredicted RBP6.71□□□□□ -1.34
CPNE3-208ENST00000614678 PNMA1Q8ND90 353 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 GMCL1P1Q8NEA9 526 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 U2AF1L4Q8WU68 220 aaKnown RBP6.71□□□□□ -1.34
CPNE3-208ENST00000614678 NUDT12Q9BQG2 462 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 GINM1Q9NU53 330 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 PPP4R2Q9NY27 417 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 ADAMTS3O15072 1205 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 ALAS1P13196 640 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 PLXNA1Q9UIW2 1896 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 SLC3A2P08195 630 aaKnown RBP6.71□□□□□ -1.34
CPNE3-208ENST00000614678 STAT2P52630 851 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 MAP2K5Q13163 448 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 PRPF38AQ8NAV1 312 aaKnown RBP6.71□□□□□ -1.34
CPNE3-208ENST00000614678 IGDCC4Q8TDY8 1250 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 ZMYM6O95789 1325 aa6.71□□□□□ -1.34
CPNE3-208ENST00000614678 ALPK3Q96L96 1907 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 CNGA1P29973 690 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 ESR2Q92731 530 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.7□□□□□ -1.34
CPNE3-208ENST00000614678 ZNF543Q08ER8 600 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 LHX8Q68G74 356 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 DPP9Q86TI2 863 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 PDGFCQ9NRA1 345 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 PLEKHA8P1O95397 391 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 CENPBP07199 599 aaPredicted RBP6.7□□□□□ -1.34
CPNE3-208ENST00000614678 TOP1P11387 765 aaKnown RBP6.7□□□□□ -1.34
CPNE3-208ENST00000614678 SLC30A10Q6XR72 485 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms