RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 RANBP6O60518 1105 aaKnown RBP9.59□□□□□ -0.87
TTC28-208ENST00000612946 ACADSP16219 412 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 KRT39Q6A163 491 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 ZNF444Q8N0Y2 327 aaPredicted RBP9.59□□□□□ -0.87
TTC28-208ENST00000612946 CFAP36Q96G28 342 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 FAM81BQ96LP2 452 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 ZNF652Q9Y2D9 606 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 MYH6P13533 1939 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 SEMA3EO15041 775 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 MRPS9P82933 396 aaKnown RBP9.59□□□□□ -0.87
TTC28-208ENST00000612946 CDR2Q01850 454 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 PPCSQ9HAB8 311 aa9.59□□□□□ -0.87
TTC28-208ENST00000612946 ANO9A1A5B4 782 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 HSPA13P48723 471 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 HMGXB3Q12766 1538 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 GEN1Q17RS7 908 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 IFIT1BQ5T764 474 aaKnown RBP9.58□□□□□ -0.88
TTC28-208ENST00000612946 HORMAD1Q86X24 394 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 AGTPBP1Q9UPW5 1226 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 UAP1Q16222 522 aaPredicted RBP9.58□□□□□ -0.88
TTC28-208ENST00000612946 TRIML2Q8N7C3 387 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 TRIM11Q96F44 468 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 YIPF3Q9GZM5 350 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 ETAA1Q9NY74 926 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 ARID5AQ03989 594 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 SH3GL2Q99962 352 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 EXOC7Q9UPT5 735 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 SOS2Q07890 1332 aaPredicted RBP9.58□□□□□ -0.88
TTC28-208ENST00000612946 SHANK2Q9UPX8 1470 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 KCNJ18B7U540 433 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 ATP2B2Q01814 1243 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 KCNJ12Q14500 433 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 WDR44Q5JSH3 913 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 MYSM1Q5VVJ2 828 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 CCDC82Q8N4S0 544 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 RGS22Q8NE09 1264 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 CATSPER2Q96P56 530 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 MTMR7Q9Y216 660 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 MAD1L1Q9Y6D9 718 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 CLASP1Q7Z460 1538 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 GRID2IPA4D2P6 1211 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 CCDC188H7C350 402 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 MEFVO15553 781 aaPredicted RBP9.58□□□□□ -0.88
TTC28-208ENST00000612946 CTIFO43310 598 aaKnown RBP9.58□□□□□ -0.88
TTC28-208ENST00000612946 KRT8P05787 483 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 CMA1P23946 247 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 ARL1P40616 181 aaPredicted RBP9.58□□□□□ -0.88
TTC28-208ENST00000612946 NECAB1Q8N987 351 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 GPT2Q8TD30 523 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 EPN3Q9H201 632 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 ANTXR1Q9H6X2 564 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 SNX1Q13596 522 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 CASP10Q92851 521 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 SLF1Q9BQI6 1058 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 STRNO43815 780 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 MX2P20592 715 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 NELFBQ8WX92 580 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 PIK3R5Q8WYR1 880 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 CCDC138Q96M89 665 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 GMNCA6NCL1 334 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 PSMD2Q13200 908 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 KIAA2013Q8IYS2 634 aa9.58□□□□□ -0.88
TTC28-208ENST00000612946 ZNF644Q9H582 1327 aaPredicted RBP9.58□□□□□ -0.88
TTC28-208ENST00000612946 ATF2P15336 505 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 AGGF1Q8N302 714 aaeCLIP9.57□□□□□ -0.88
TTC28-208ENST00000612946 TEKT1Q969V4 418 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 ATP6V0A4Q9HBG4 840 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 EPN1Q9Y6I3 576 aaPredicted RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 DNMT1P26358 1616 aaKnown RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 GARSP41250 739 aaKnown RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 SEMA3FQ13275 785 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 CRNKL1Q9BZJ0 848 aaKnown RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 DEFA1P59665 94 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 DEFA3P59666 94 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 YWHAEP62258 255 aaKnown RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 ICA1Q05084 483 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 KLHL30Q0D2K2 578 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 MFN1Q8IWA4 741 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 KLHL7Q8IXQ5 586 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 CACTINQ8WUQ7 758 aaKnown RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 MYH9P35579 1960 aaKnown RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 SUGP1Q8IWZ8 645 aaKnown RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 SESN1Q9Y6P5 492 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 LDHCP07864 332 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 KIF11P52732 1056 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 PRPF38AQ8NAV1 312 aaKnown RBP9.57□□□□□ -0.88
TTC28-208ENST00000612946 NRDE2Q9H7Z3 1164 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 USP40Q9NVE5 1235 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 PRAG1Q86YV5 1406 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 NLRP6P59044 892 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 GUCY2DQ02846 1103 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 CEP19Q96LK0 163 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 TTC25Q96NG3 672 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 FMO2Q99518 471 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 GRIN2BQ13224 1484 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 DAB1O75553 588 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 TRPC1P48995 793 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 UNC13AQ9UPW8 1703 aa9.57□□□□□ -0.88
TTC28-208ENST00000612946 TRAF5O00463 557 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms